Gene Ssed_1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1544 
Symbol 
ID5613686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1844772 
End bp1845044 
Gene Length273 bp 
Protein Length90 aa 
Translation table11 
GC content44% 
IMG OID640932413 
Producthistone family protein DNA-binding protein 
Protein accessionYP_001473283 
Protein GI157374683 
COG category[L] Replication, recombination and repair 
COG ID[COG0776] Bacterial nucleoid DNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000007734 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000745392 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACAAAT CTGAACTAAT CGAGAAAATC GCTTCTGGTG CTGACATTTC TAAAGCCGCT 
GCTGGCCGTG CATTAGATTC TTTCATTGGA GCTGTAACTG ACGGCTTAAA AGAAGGCGAT
AAGATTTCTC TTGTTGGTTT TGGTACTTTC GAAGTGCGTC AACGCGCTGA GCGTACTGGT
CGCAACCCAC AGACGGGTAA AGAGATCAAA ATCGCAGCAG CTAATATTCC TGCATTCAAA
GCAGGTAAAG CTCTGAAAGA CGCTGTAAAC TAA
 
Protein sequence
MNKSELIEKI ASGADISKAA AGRALDSFIG AVTDGLKEGD KISLVGFGTF EVRQRAERTG 
RNPQTGKEIK IAAANIPAFK AGKALKDAVN