| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1542 |
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| Symbol | clpX |
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| ID | 5613684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1840725 |
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| End bp | 1842002 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932411 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | YP_001473281 |
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| Protein GI | 157374681 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000361141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000447047 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCGACA ACAAAAGCAA CGGTGATAGC GGGAAACTGC TGTACTGCTC TTTTTGTGGA
AAGAGTCAAC ATGAGGTTCG TAAACTCATC GCTGGCCCTT CAGTATATGT TTGTGATGAG
TGCGTTGAGC TCTGCAACGA TATTATCAGG GAAGAGATCA AAGAGATTTC ACCGAAACAA
GATCAAGACA AGTTACCGAC TCCAAGAGAG CTGAGAGCGC ATTTGGATGA TTATGTCATT
GGACAGGATA AGGCTAAGAA AGTCCTTTCT GTGGCCGTAT ATAATCACTA CAAACGCTTA
AAGAATGCCG GTCCTAAAGA TGGCGTAGAG CTGGGCAAGA GTAACATCTT GCTTATTGGT
CCAACGGGTA GTGGTAAAAC ATTGCTTGCC GAGACCTTAG CTCGTTTCTT GAATGTTCCT
TTCACTATGG CCGATGCCAC GACACTAACT GAAGCCGGTT ATGTTGGTGA AGATGTCGAG
AATATCATTC AGAAGCTGCT GCAGAAGTGT GACTATGATG TAGAAAAAGC ACAACGCGGT
ATCGTTTATA TCGATGAAAT TGACAAAATC AGCCGTAAAT CTGATAACCC GTCGATTACT
CGTGACGTTT CCGGTGAGGG TGTGCAGCAG GCACTACTTA AGCTGATCGA AGGCACGGTT
GCTGCGGTTC CACCACAAGG TGGCCGTAAA CACCCTCAGC AAGAGTTCTT GCAAGTTGAT
ACATCTAAGA TTCTATTCGT CTGTGGTGGT GCATTCTCAG GTCTTGAGAA GGTCATTGAG
CAACGTTCTC ATACCGGAAC CGGAATTGGT TTTGGTGCCG AGGTCAAAGG CGAAGATGAC
AAGGCGTCAA TCTCAGATAT CTTGATGCAG GTTGAACCTG AAGATTTGGT TAAATACGGT
CTGATCCCAG AGTTTATCGG TCGTTTACCT GTCTTAGCGA CTTTGGCAGA ACTTGATGAT
GCTGCACTTA TCCAAATTCT ATCAGAACCT AAAAATGCGA TAACAAAGCA GTTTGCTGCC
TTGTTTGACA TGGAAGGTGT TGAGTTAGAG TTTAGAGAAG ATGCGCTCAA AGCGATTGCA
CTGAAAGCAC AGACTCGTAA AACGGGTGCT CGTGGTCTAC GTTCAATTGT TGAAGGCATT
TTGCTTGATA TCATGTATGA CCTACCATCG ACTGAAAATG TGGCCAAGGT GGTCATCGAT
GAATCAGTGG TAAAAGGGGA GTCAACTCCT ATACTCATCT ATGAAAATAG CGAGTCTCAA
GCAGCCGGCG CTGAGTAA
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| Protein sequence | MGDNKSNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKQ
DQDKLPTPRE LRAHLDDYVI GQDKAKKVLS VAVYNHYKRL KNAGPKDGVE LGKSNILLIG
PTGSGKTLLA ETLARFLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV AAVPPQGGRK HPQQEFLQVD
TSKILFVCGG AFSGLEKVIE QRSHTGTGIG FGAEVKGEDD KASISDILMQ VEPEDLVKYG
LIPEFIGRLP VLATLAELDD AALIQILSEP KNAITKQFAA LFDMEGVELE FREDALKAIA
LKAQTRKTGA RGLRSIVEGI LLDIMYDLPS TENVAKVVID ESVVKGESTP ILIYENSESQ
AAGAE
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