| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1538 |
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| Symbol | cysS |
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| ID | 5612123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1835163 |
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| End bp | 1836542 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932404 |
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| Product | cysteinyl-tRNA synthetase |
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| Protein accession | YP_001473277 |
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| Protein GI | 157374677 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0215] Cysteinyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00435] cysteinyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.205032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0027552 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTGAAGC TATACAACAG TCTGACCCGC CAAAAAGAGG AATTCAAACC ATTACAGCCA
GGAAAAGTTG GCATGTATGT GTGTGGGATA ACCATCTATG ACCTTTGTCA TATCGGTCAC
GGTCGTACTT TTGTCTCTTT CGACATGATA GTGAGATACC TGCGTTACTC CGGATATGAT
GTGAACTTTC TACGCAACAT TACCGATGTT GACGACAAGA TCATTAAGCG TGCTAATGAA
AATAAAGAGA GCTGTGAGTC ATTGACCGAA CGGTTAATTG GCGAGATGCA TCGTGATTTT
GATGCGCTTA ATATGAAGCG TCCCGACTTT GAACCAAGAG CGACGCTACA TATACCTGAG
ATTATCGATA TGGTTGAAAA ACTTATCGAG AAAGAACATG CCTATGTGTC AGGTAATGGT
GATGTACTGT TCAGTGTCTC CTCTTTTCCT GAATATGGAC GTCTGTCCGG ACAAAACCTA
GACCAGTTAC AAGCCGGTGC CCGAGTCGAA GTGGAAGACA CTAAACGTGA TCCAATGGAT
TTCGTGCTGT GGAAGATGTC CAAGCCTGGC GAGCCTACAT GGGAGTCACC TTGGGGACCG
GGCCGCCCTG GCTGGCACAT TGAATGTTCA GCAATGAACT CTAAGCACTT GGGTCAACAT
TTCGATATCC ATGGTGGCGG CTCAGATCTT CAATTTCCTC ACCATGAGAA TGAAATTGCT
CAGTCTTGCT GTGCTCACAA CACGCCGTAC GTAAATTACT GGATGCATAC CGGTATGGTG
ATGGTCGATA AAGAGAAGAT GTCTAAGTCG TTAAACAACT TCTTCACCAT CAGAGATGTT
TTAGAGCACT ATGATGCGGC AACCGTGAGG TATTTCCTGT TGTCTGGTCA TTACCGCAGC
CAACTGAACT ACTCAGAAGA CAATCTTAAG CAGGCAAAGT CGGCGCTTGA GCGTCTCTAT
ACATCACTCA AAGGTTTAGA CCTGTCGGTT GAAGCTGCAT CTGCCGATGA GTATGTCGCT
AAGTTTAAGG TCGCAATGGA TGATGACTTC AATACGCCGG AAGCTTACTC GGTGCTATTT
GAGATGGTTC GAGAGATAAA CCGTCTAAAA GAAGCTGATA ATGCTAAAGC ATCTTCACTC
GGTGTAAAAC TTAAAGAGCT TGCCGATGTA TTAGGTATAT TGGACCAGGA TGTCGACACT
TTCTTTAAGG GTGAAGGCAG TACAGATGAA GTGGCGGAGA TCGAAGCCCT GATTGCCGAG
CGTAACAGAG CGAGAGCCGA GAAGGATTGG CCCGCTGCCG ATGTTGCCCG TGATGGCTTG
AACGCACTCG GTGTTATCTT AGAAGATGGC CCGGAAGGTA CAACCTGGCG TAAGAAGTAA
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| Protein sequence | MLKLYNSLTR QKEEFKPLQP GKVGMYVCGI TIYDLCHIGH GRTFVSFDMI VRYLRYSGYD
VNFLRNITDV DDKIIKRANE NKESCESLTE RLIGEMHRDF DALNMKRPDF EPRATLHIPE
IIDMVEKLIE KEHAYVSGNG DVLFSVSSFP EYGRLSGQNL DQLQAGARVE VEDTKRDPMD
FVLWKMSKPG EPTWESPWGP GRPGWHIECS AMNSKHLGQH FDIHGGGSDL QFPHHENEIA
QSCCAHNTPY VNYWMHTGMV MVDKEKMSKS LNNFFTIRDV LEHYDAATVR YFLLSGHYRS
QLNYSEDNLK QAKSALERLY TSLKGLDLSV EAASADEYVA KFKVAMDDDF NTPEAYSVLF
EMVREINRLK EADNAKASSL GVKLKELADV LGILDQDVDT FFKGEGSTDE VAEIEALIAE
RNRARAEKDW PAADVARDGL NALGVILEDG PEGTTWRKK
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