| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1532 |
|---|
| Symbol | |
|---|
| ID | 5613498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1827548 |
|---|
| End bp | 1829842 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932398 |
|---|
| Product | ferrous iron transport protein B |
|---|
| Protein accession | YP_001473271 |
|---|
| Protein GI | 157374671 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0370] Fe2+ transport system protein B |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00437] ferrous iron transporter FeoB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAGC AATTTCATTG TGTCACCGTC GGTAACCCCA ATGCGGGAAA ATCGACACTG
TTTAATGCAC TGACCGGCGC AAACCAACAA GTGGGTAACT GGTCTGGTGT GACGGTTGAA
AAGAAGACTG GTCTGTTTAC GCTTAATGGC GCGGATGTCT ACCTCACCGA TCTTCCTGGG
ATCTATGACC TTCTTCCGGC TGGCAGCACC TGTGATTGTT CGTTGGATGA ACAGATTGCT
CAACAGTACC TTGCAGAGCA ACAAGTGGAT GGCATCATCA ATCTTGTCGA TGCGACGAAC
ATCGAAAGAC ATCTCTACTT AACTGTACAG CTTCGCGAAC TTGGGATCCC AATGGTCGTG
GTTCTCAATA AAATCGATGC AGCAAAGAAG CATGGTATTG AGATCGATAC AGAAAATATG
GCCCGTACAT TAGGTTGCCC GGTTGTCAGC GTCTGTTCCC GTGATGAAGC CGACATCGAA
AAAGTTAAAG CGCAAGTGGT CGATCTGCTT GAGGGTAAAG TGTCTGAAGC ACCTCTGGTG
CTTGATTATG ACCCTCGCAT TGAAACTGGT GTAAATTCAT TATTGAGTAA TGATGACAAC
CTGAGCCGCG GTCGTGCCCT AGCTATGTTA GGTAACGGCT TAGGCTGTGG TAAGTGTAAA
AATGGCCAGA TGCTCGATGA AGTTAACCAA TGCTCCGAGT CGTTATCCAG CCAGGGTAAA
GATATCGAGA TCATGGTTGC GACAACTCGC TTCGATTTTG TTCAGAATGT TTACACTTCA
TCTGTAAATG CTAATGGCGC AGAAACCCTA AGCGATAAGC TGGATAAGGT GATTCTGCAT
CCCGTTGCCG GTGTGCCTGT CTTCTTGTTT GTGATGTATC TGATGTTTAT GTTCAGCATC
AATGTCGGAA GCTCATTTAT CGATTTCTTC GATATTACCG CCGGTGCTAT TTTTGTCGAT
CACCTTGGTG CACTGATGTC TGGTATGGGG TCTCCCACCT GGTTAGTGAC TATCATCGCC
GGTGGTATCG GACAGGGTAT TCAAACGGTA GCCACATTTA TTCCCGTTAT TGCAGCTCTG
TTTTTGGCGC TTTCGGTTCT GGAAGGGTCT GGGTACATGG CTCGTGCGGC GTTCGTTGTT
GATGGCTTGA TGCGCAGAAT TGGCCTTCCC GGTAAAGCGT TCGTTCCTAT GATTGTTGGT
TTCGGCTGCT CGGTTCCTGC CATTATGGCA ACCAGAACCC TGGGCAGTGA GCGTGAGCGC
ATAGTGACCG GCATGATGGC ACCCTTTATG TCATGTGGCG CTCGTCTACC CGTTTATGCA
CTGTTTGCCG CTGCCTTCTT CCCTGAGTCT GGTCAGAACC TGGTATTCAT GCTGTACATC
ATTGGTGTGT TAGCCGCCGT GGGTACAGGC TTACTGCTTC GCTCTACCCT ATTGCCGGGA
AGTAGCAGTG CCGTTGTTAT GGAGCTGCCT AGCTACGAGA AGCCAAAGTT CAAGACGGTG
ATGAACCGTA CAGGTAAGCG TACCAAGAGC TTTATAATGG GCGCAGGTAA AACCATTGTT
ATCGTTGTGA CTCTATTGAA CTTCGTTAAT TCGATTGGTA TCGACGGCTC ATTTGGTCAC
GAAGATAGCT CTGAGTCTGT CTTGAGTGTG GCTAGCCAGA AAGTAACACC GCTATTTGCA
CCTATGGGTG TTGAGCAAGA TAACTGGCCT GCAACTGTCG GTATCATTAC CGGTATCTTT
GCTAAAGAAG CGGTAGTGGG TACATTAAAT AGCCTTTATA GCACGCCAAG TGATGGTGAA
GAGGAGTTGG CTCCTTTCAT TGAGACACTA AATGAAGCAT TGGCAACGAT TCCTGATAAC
CTGTTAGGTA TTCAGGTTAA TGATCCACTT GGGCTCGATG TGGGTGATGT TTCATCGGTT
GCAGTTGCAT CTGAAGAGCT AGAGGTTGAT ACATCTACTT TCACTGCACT TCAAGCTGGA
TTTACTGGTA TTGCTGCAGC CTTCGCCTAC CTATTATTTA TCTTGCTGTA TACACCTTGT
GTTGCCGCAA TGGGCGCCTT GGTTGGTGAG TTCGGTGGAC GTTGGGCGGC TTTCGCCGGA
ACCTGGACAT TTGGCTTAGC TTACGGAACG GCAACTATCT TCTATCAGGC CGCGACCTTT
AGTGCACATC CGCTACAGTC GAGTCTCTGG ATTGGCTTCT TCGTGACCGC CTTAGTTGTT
TTCTATGTCT GGTTAAAACA GAAAGCCAAG CGTAGTCAGA CGATCATTCC GGGTATAAAG
ATCATTACCG AATAA
|
|---|
| Protein sequence | MPKQFHCVTV GNPNAGKSTL FNALTGANQQ VGNWSGVTVE KKTGLFTLNG ADVYLTDLPG
IYDLLPAGST CDCSLDEQIA QQYLAEQQVD GIINLVDATN IERHLYLTVQ LRELGIPMVV
VLNKIDAAKK HGIEIDTENM ARTLGCPVVS VCSRDEADIE KVKAQVVDLL EGKVSEAPLV
LDYDPRIETG VNSLLSNDDN LSRGRALAML GNGLGCGKCK NGQMLDEVNQ CSESLSSQGK
DIEIMVATTR FDFVQNVYTS SVNANGAETL SDKLDKVILH PVAGVPVFLF VMYLMFMFSI
NVGSSFIDFF DITAGAIFVD HLGALMSGMG SPTWLVTIIA GGIGQGIQTV ATFIPVIAAL
FLALSVLEGS GYMARAAFVV DGLMRRIGLP GKAFVPMIVG FGCSVPAIMA TRTLGSERER
IVTGMMAPFM SCGARLPVYA LFAAAFFPES GQNLVFMLYI IGVLAAVGTG LLLRSTLLPG
SSSAVVMELP SYEKPKFKTV MNRTGKRTKS FIMGAGKTIV IVVTLLNFVN SIGIDGSFGH
EDSSESVLSV ASQKVTPLFA PMGVEQDNWP ATVGIITGIF AKEAVVGTLN SLYSTPSDGE
EELAPFIETL NEALATIPDN LLGIQVNDPL GLDVGDVSSV AVASEELEVD TSTFTALQAG
FTGIAAAFAY LLFILLYTPC VAAMGALVGE FGGRWAAFAG TWTFGLAYGT ATIFYQAATF
SAHPLQSSLW IGFFVTALVV FYVWLKQKAK RSQTIIPGIK IITE
|
|---|
| |