Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1526 |
Symbol | |
ID | 5613219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1816751 |
End bp | 1818967 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932392 |
Product | decaheme cytochrome c |
Protein accession | YP_001473265 |
Protein GI | 157374665 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.324001 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAA AGTTCAACTC TTTTAATGCA AAAAGGAGTG CGGCAGCCAA GGCTGTACTC AGTGCTGGGA TACTCTCTTT TGCACTTGCC GGTTGCGGCA GCGACGGTAA AGATGGTGAA GATGGCAAAG ATGGCGTTGT TGGCGTTAAC ATCGACGCAG CAAAAAGTGT AAACGCGATA TTTACTAACG CAACGGTTGA GGCCGGCGTC GTAACAGTCG ATTTCAAGCT TCAAAATGAC AACGGTGTCG CCGTTCTTGG TCTGACCAAA GATCACGACT TACGTTTCGG TATCGCTCAA CTGAGCCATG TCACCGAGAT GATGGGTGAA ACCGAAGTTG ATAGAGGCTA CCAATGGCAA GCCTATATCA ATGCTGAAAA AACACCGAAT CCAGACTGGG TTCCTGAAGG TGAGTCACAT ATCAACCCAT CGAACCAGTT CCAGGCTAAT GTAGAGAAAG CTGGCGACTG TGAGACATGT TTCGTCGATA ACGAAGATGG TAGCTACACC TACACCTATC AGCAAAATAT CGGTAGTGTC GTTGAGCCTG TCGAAGTCAC TTACAATGCA GAAGAAACTC AACGTGCCAC TATGGAACTT GAGCTCTCAA GCTTTGCTGC CAATGCCAAC TATGACTGGC AGCCATCTAC CGGCACAACC GAAGGCATTC AGACTCGTGA CGTAGTTTCA ATCGAAACAT GTTACACCTG TCACCAGCCA GAGAGTCTCG AGCTTCATGG CGGCCGTCGA ATCAACATCG AAAACTGCGC ATCTTGTCAC ACTGGCACTT CAGGCGACCC TGAAAGTGGC AACAGCGTCG ACTTTACCTT TATGATCCAT GCGATCCATA AAGGACAAGA GAGAATGACC AGCACGGCTG AAGGCATGGT TCCTGCTCCA TATAAAGTTA TCGGATATGG TGGCGGTGTA CATGATTACG GCAAGGTGAT GTTCCCGCAA AAACCTGCTG CAAATTGTGC CGCTTGTCAC GTTGAAGGCG AAAATGCACC TGCAAATGCC GATCTGTTTA AAGCAAATCT GAGCAACACA GCTTGTGTGG GTTGTCATAC AGAGAAGCCT TCTCAAATGC ACAGCAGCAC TGACTGTATG TCTTGTCACA TCGAAGAGGG TTATGCCCGT AGCGGTGTTG AAGCTCATGG CGATGCAACT AAAGCCTATG ACGTAAGCAA GAACTACTCG GCAACATTCA GCAATATCAA ACCTGAAGGT CAAGGCCTGA GCTTTGATGT ACAGCTTCTT GATGATGCTG GTGCGCCAAT TGCTAAAGAG TTTATCTACA AACTAGGTTA TTCAAACCCA TACATCGTTG TATCTTGGGA TGTCGATGCC GATTACCCTG CATACAAAAC GGGTAGTAAA TACTCAGAGC GTCGTATCAG CTTATATGAT GCATCACAGG CTACCTATGA TGAAGCTAAC AAGACGTTCA GTGTTGTCAG TGCAAACATA GCGCTACCAG CTGACATCAA TGGTAAGAGC TTCGAGCTAC TTCCTGTTGT TAAGACATGC TTTAAGAAAG GTGGCTACGG TCGTCCGCTT GTTGAGCCTA TGTCTTGCTA CGATGACGAT GGTGTGACTA TTGCCGGCAA CGCAAAAGCG GCCTACATCC AAGACGAGCC AATGCGCTTC ATCTGGAATA ATGGTCAATC TGAAGAGCCA GCTGTCGCTC GTCGTTCAAT TGTTGATGAT GCCAAGTGTC ACAACTGTCA TGGCGCCGAG TTCTACCATG ACTCTAATGG TGTCAACTGT CAGGCATGCC ACACTTCAGA TAAGGCTGTT AAAGAGTCTG AGCGTAATTC TGGTAAGTTT GACAAGCCAA CAAGCTTCGC TTACAAAGCG CACCACGCCG AAGGTCACTA CCTGAAGTAT GCGGGTGTTG GTTCTAAAAC GGTTGTTAAA ACAGACTGTA AGACATGTCA TACCGATAAC GGCTTTGAGC TGGGCCGCTC TCCAGAGCGT GTTTGGAACT ACCCTAACTT GGAGACATTG GATAGCACTG GTATCTTCGT TTCATCTGAT GCCGGTACTT GCTTAAGCTG TCACCAGAAG TACCTTGATG ATGCGGCTAA GTCTCACATT GTCACTAACG GCGGTATCCT TGACGGTACA AGTACAGAAG ACGTTCGAAC ACGTGCGGCT GAAGCTTGCC AGACTTGTCA CACACCAGAA AAAGTAATAG CACTTCACGG TCACTAA
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Protein sequence | MMKKFNSFNA KRSAAAKAVL SAGILSFALA GCGSDGKDGE DGKDGVVGVN IDAAKSVNAI FTNATVEAGV VTVDFKLQND NGVAVLGLTK DHDLRFGIAQ LSHVTEMMGE TEVDRGYQWQ AYINAEKTPN PDWVPEGESH INPSNQFQAN VEKAGDCETC FVDNEDGSYT YTYQQNIGSV VEPVEVTYNA EETQRATMEL ELSSFAANAN YDWQPSTGTT EGIQTRDVVS IETCYTCHQP ESLELHGGRR INIENCASCH TGTSGDPESG NSVDFTFMIH AIHKGQERMT STAEGMVPAP YKVIGYGGGV HDYGKVMFPQ KPAANCAACH VEGENAPANA DLFKANLSNT ACVGCHTEKP SQMHSSTDCM SCHIEEGYAR SGVEAHGDAT KAYDVSKNYS ATFSNIKPEG QGLSFDVQLL DDAGAPIAKE FIYKLGYSNP YIVVSWDVDA DYPAYKTGSK YSERRISLYD ASQATYDEAN KTFSVVSANI ALPADINGKS FELLPVVKTC FKKGGYGRPL VEPMSCYDDD GVTIAGNAKA AYIQDEPMRF IWNNGQSEEP AVARRSIVDD AKCHNCHGAE FYHDSNGVNC QACHTSDKAV KESERNSGKF DKPTSFAYKA HHAEGHYLKY AGVGSKTVVK TDCKTCHTDN GFELGRSPER VWNYPNLETL DSTGIFVSSD AGTCLSCHQK YLDDAAKSHI VTNGGILDGT STEDVRTRAA EACQTCHTPE KVIALHGH
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