Gene Ssed_1505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1505 
Symbol 
ID5610714 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1790478 
End bp1792484 
Gene Length2007 bp 
Protein Length668 aa 
Translation table11 
GC content45% 
IMG OID640932371 
Productcholine/carnitine/betaine transporter 
Protein accessionYP_001473244 
Protein GI157374644 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCTGTA TCAACTATGT GCTAATCTTC GAGAGTTTTA TGTCGATCAA AACCAGTATT 
AATCCTCCTG TTTTTTTCTC TTCCGTTTTT ATCATAGCGT TAATGGTGTT TGTCGGGGCT
ATCTGGCCAC AGCAGGCACA AATTGTATTT AAGTCAGCCC AGTCTTGGTT CGAACTTAAG
GCCGGTTGGC TTTACATCTT AGGTGTTGCC ATCTTCCTTA TCTTTATCAT CTTTGTGATG
GTGAGTCGTT TCGGTGATAT TAAGTTAGGA CCGGATCACG CCGAACCCGA TTACAGCTAC
AAAAGCTGGA TAGCCATGCT GTTTTCAGCC GGCATGGGCA TCGGCTTGAT GTTCTTTGGT
GTTGCCGAAC CTGTTATGCA CTATTTAGCT CCACCGGATG CGACTCCTGA GACGATTCAG
GCCGCTAAAG ATGCAATGAA GATCACTTTC TTCCATTGGG GGATCCATGC CTGGGCCATC
TATGCGGTTG TCGCACTTAG TCTGGCTTAT TTCTCCTATC GGCATAAGCT ACCTCTACTG
CCACGAAGTG CCCTTTATCC TCTGATTGGT GAACGTATCT ATGGGCCTAT AGGGCATGCT
GTCGATACAT TTGCCGTTAT CGGAACCATG TTTGGTGTGG CCACATCTCT GGGTTTTGGT
GTGTTACAAG TTAACTCAGG GCTAAACTAT CTGCTCGGTG TGCCGGTAAA TGCTTACGTC
CAAGTTGGGC TTATTATCGC GATTTCATTG ATTGCGACAC TCTCAGTTTT CTCCGGGTTG
GATAAAGGAG TTAAACGACT CAGTGAATTG AACTTAGGTT TAGCAATATT ACTACTAATT
TTTGTGCTGA TCTTTGGACC TACCGTTGAG CTACTACAGG CCTTTGTACA AAATACCGGA
GGATATTTGA GTGATATTGT CGGTAAAACT TTTAACTTGT ATGCCTACGA GCAGAAAAAT
GATTGGATTG GGGGTTGGAC CTTGCTCTAC TGGGGCTGGT GGATCTCATG GTCCCCATTT
GTAGGAACCT TTATTGCCAG AGTTTCCCGT GGCCGTACCA TCAGAGAGTT TTTGGTGGGT
GTGTTATTCG TACCTACTGC GTTTACCTTC TTGTGGATGA CAGTATTTGG TAACACGGCG
ATAGATGCGA TCATGGACCA TGGTGCAAGC TATCTGACGG AAGCTGTTTC AAGTGATGTC
TCCGTTGCCT TGTTTGTCTT TTTTGAGCAT ATGCCATTTT CCACTCTGCT ATCGACGATA
GCCTTGTGTC TGGTTATCAC CTTCTTTGTT ACTTCGTCCG ATTCGGGGTC ACTGGTTATC
GATAACCTAA CATCGGGTGG CGATCATGAA GCACCTGTAT GGCAGCGTGT CTTTTGGGCG
CTACTTCAGG GCGTTGTCGC TTCTGTTTTA TTGCTTGCCG GCGGCCTGCA AGCACTACAA
ACGGTAGCGA TTGCCAGTGC ATTGCCTTTT TTGTTAGTCA TGCTCTTGAT GTGTTTTGGT
TTGTACAAGG CACTCCAGGA TGACTGGCTT AAGATCAACA GCGTGCAGCT TCATAATACG
AGTGTACAGT TCACCAAAAC TAACGTGAAT TGGGAAGACC ATATCGATGT GTTAGTGTCT
CATCCGAGTA AAGAAGATGC ACAAAATTTT CTCGACAATG TGGCCACGCC GGCGCTGACT
AAGGTGTGTA AGAGCTTTAT CAGTAAAGAG ATCCCTGCAG AGTTGTTGCA TTTTGAAAAT
CGTATTCGTT TCGTTATCGC CAACGAGGAA TATGATGACT TTGCCTATGG TCTACGGGTA
CGTGCATTTA CCATCATCAA CCCAATCGAG AGTGAACTCG ATGAAGGTGA AACCGATTAT
TATCGGGTCG AGGTGTTCCT TGAGCATGGC GGTCAACATT ATGATGTGAT GGGCTTCACT
CAAGATCAGA TCTTGGCAGA TGTGGTGACC CAGTATGAAA AGTATCTGCA TTACCTGCAC
CTATCCAGTT CAGAATACTT AGGTTAA
 
Protein sequence
MSCINYVLIF ESFMSIKTSI NPPVFFSSVF IIALMVFVGA IWPQQAQIVF KSAQSWFELK 
AGWLYILGVA IFLIFIIFVM VSRFGDIKLG PDHAEPDYSY KSWIAMLFSA GMGIGLMFFG
VAEPVMHYLA PPDATPETIQ AAKDAMKITF FHWGIHAWAI YAVVALSLAY FSYRHKLPLL
PRSALYPLIG ERIYGPIGHA VDTFAVIGTM FGVATSLGFG VLQVNSGLNY LLGVPVNAYV
QVGLIIAISL IATLSVFSGL DKGVKRLSEL NLGLAILLLI FVLIFGPTVE LLQAFVQNTG
GYLSDIVGKT FNLYAYEQKN DWIGGWTLLY WGWWISWSPF VGTFIARVSR GRTIREFLVG
VLFVPTAFTF LWMTVFGNTA IDAIMDHGAS YLTEAVSSDV SVALFVFFEH MPFSTLLSTI
ALCLVITFFV TSSDSGSLVI DNLTSGGDHE APVWQRVFWA LLQGVVASVL LLAGGLQALQ
TVAIASALPF LLVMLLMCFG LYKALQDDWL KINSVQLHNT SVQFTKTNVN WEDHIDVLVS
HPSKEDAQNF LDNVATPALT KVCKSFISKE IPAELLHFEN RIRFVIANEE YDDFAYGLRV
RAFTIINPIE SELDEGETDY YRVEVFLEHG GQHYDVMGFT QDQILADVVT QYEKYLHYLH
LSSSEYLG