| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1499 |
|---|
| Symbol | |
|---|
| ID | 5610362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1782455 |
|---|
| End bp | 1783309 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932365 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473238 |
|---|
| Protein GI | 157374638 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000002161 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGGAA CAGCTATGTC AGGTTCAATG TTAGGTACTG TCTCAGGTAC GATAAAAAAA
ATGCGCGCCA CACTAGATAA TGATGGGCGG GTAGAATACC AACTGCCCAT AGGTGATGAG
CTGTTAGCCA TGAACCCTCT TATCGGCACT AGAGTTACCT TGACGCATAC CGGCAAAATT
TGCTGCAGTA ACTGCGGCAA AAAGACCAAA AAAAGTTATT CTCAAGGACA CTGTTTTGTC
TGCATGAAGA AGCTGGCAAG TTGCGATATG TGCATCATGA AGCCCGAAAC CTGTCACTTT
GACCAAGGTA CCTGTCGTGA GCCACAGTGG GGAGAAGACA ACTGTTTCGT CCCTCACTAT
GTCTACCTGT CAAATACATC GGGTCTCAAG GTCGGCATCA CCCGTCATAC CCAGTTACCA
ACACGTTGGA TAGATCAGGG GGCCACTCAG GGCTTACCCA TTTTAAAGGT ATCGACAAGA
CAGATATCAG GTTTAGTGGA AGTCGAGTTG GCGAAGTTGA TTGCTGATAA GACCAACTGG
CGCACTATGC TCAAAGGTAA TGCGGAAAAT ATCGATCTTA AAGCTCACGC TACCGAGCTT
TTACCCCAGG TTGAGAGTAA AATTCATGAG ATTTGTATGG CCCATGGCGA ATACGCCATC
GAGAAGCTCA ATGAAGATAT TCAGGAGATA CATTTCCCTG TCACTGAGTT CCCGACAAAG
ATAACGTCAC ATAATTTTGA TAAAAATCCT ATCGTTAGCG GGGTTTTGCA GGGAATTAAG
GGGCAATATC TTATCTTCGA CACCGGCGTC ATCAACCTAC GCAAGTTTAC CTCCTATGAG
ATAAGTGTCG GCTAA
|
|---|
| Protein sequence | MLGTAMSGSM LGTVSGTIKK MRATLDNDGR VEYQLPIGDE LLAMNPLIGT RVTLTHTGKI
CCSNCGKKTK KSYSQGHCFV CMKKLASCDM CIMKPETCHF DQGTCREPQW GEDNCFVPHY
VYLSNTSGLK VGITRHTQLP TRWIDQGATQ GLPILKVSTR QISGLVEVEL AKLIADKTNW
RTMLKGNAEN IDLKAHATEL LPQVESKIHE ICMAHGEYAI EKLNEDIQEI HFPVTEFPTK
ITSHNFDKNP IVSGVLQGIK GQYLIFDTGV INLRKFTSYE ISVG
|
|---|
| |