| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1472 |
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| Symbol | |
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| ID | 5610773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1745811 |
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| End bp | 1746755 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932338 |
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| Product | homoserine O-succinyltransferase |
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| Protein accession | YP_001473211 |
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| Protein GI | 157374611 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1897] Homoserine trans-succinylase |
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| TIGRFAM ID | [TIGR01001] homoserine O-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.244322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000239725 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGGTTA AAATTCCCGA TGATCTGCCT GCAGCAGAGA TCTTAGAGTC AGAAAATATC
TTCGTTATGT CTGAGACTCG GGCTGCAAAT CAAGATATTC GTCCGATGAA AGTGCTAATT
CTGAACTTGA TGCCGAATAA AATTGAGACC GAAACGCAAC TTTTGCGTTT ATTGGGTAAT
ACTCCCCTGC AGGTCGATGT GGATCTGCTC AGAATTCACG ATAAAGAGTC CAGACACACC
TCAATCGATC ACATGAATAA CTTTTATCGT GATTTCGAAG CCGTGCGTCA TAAAAACTAT
GATGGCTTGA TAATCACCGG CGCACCCTTG GGTCAGGTTG AATTTGAAGA TGTAAGCTAT
TGGGATCACA TTCGTGAAAT TATCGATTGG TCACAGCAAC ATGTCACCTC CGTGCTTTTT
TTATGCTGGG CGGCCCACGC AGCTCTGTTT CATCTCTACG GACTGAACAG AAAGCTACTT
AAGGAAAAAC GCTCCGGGGT ATTTCTGCAT AAGCGTACTC ACCGACATGT TCCTTTGCTA
CGCGGATTCG ATGATGAGTT CCTGGCCCCG CATTCACGTT TTGCTGAAAT GGATGTCCAA
CTTTTAAAAG CGCATCCGGC ACTGCAGGTG TTAACTGAAT CCGATGAGGC TGGCGCCTAT
ATGGTGCTCA GTACGAATAA TCGTAACCTG TTTGTTATGG GGCACCCGGA GTACCAGAAA
TCGACACTGA AAGATGAGTA TTTCCGCGAT CTGGGTGCAG GGTTACAACC TGAGATCCCG
CAAAACTATT TCAGGCACAA TGATCCGGGC CAAGACCCCG TTGCTCGCTG GTATGGTCAT
GGCAGCCTGT TGATCAGCAA TTGGCTTAAC TATTATGTTT ACCAGTTAAC CCCCTATAAC
CTGGATGATA TGAGTGGCAT CACCCCTTGG GAAAATGAGG TTTAA
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| Protein sequence | MPVKIPDDLP AAEILESENI FVMSETRAAN QDIRPMKVLI LNLMPNKIET ETQLLRLLGN
TPLQVDVDLL RIHDKESRHT SIDHMNNFYR DFEAVRHKNY DGLIITGAPL GQVEFEDVSY
WDHIREIIDW SQQHVTSVLF LCWAAHAALF HLYGLNRKLL KEKRSGVFLH KRTHRHVPLL
RGFDDEFLAP HSRFAEMDVQ LLKAHPALQV LTESDEAGAY MVLSTNNRNL FVMGHPEYQK
STLKDEYFRD LGAGLQPEIP QNYFRHNDPG QDPVARWYGH GSLLISNWLN YYVYQLTPYN
LDDMSGITPW ENEV
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