| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1469 |
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| Symbol | |
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| ID | 5610760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1743333 |
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| End bp | 1743980 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932335 |
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| Product | outer membrane protein W |
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| Protein accession | YP_001473208 |
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| Protein GI | 157374608 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3047] Outer membrane protein W |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000900043 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000643724 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGAACA AAACTATTGT GTCTGGATTA ATCGCGGCCG CCCTACTATC TACCGGTTTC
GCCTCTTCTG TTTCTGCCCA CCAAGCGGGT GATATAATCA TTCGTGCCGG TGTTGCTGTT
GTTGCACCTA ATGAGTCGAG TCAAGATGTC GCGGGAAATG GTGAGTTTGG CGTCGATGAT
AACACTCAGC TGGGTTTGAA CTTCGGCTAT ATGTTGACTG ACAATATCGG TATCGAGCTT
TTAGCGGCTT CTCCGTTTAC TCATGATATC TCACTTGATG GTATAGGAAA GATTGCCGAG
ACTAAGCAAC TGCCACCGAC CTTAGTCGCT CAATACTACT TCGGTTCTGC CGATTCTAAG
CTTCGTCCAT ATATCGGTGC CGGTGTTAAC TTCACTAACT TTTTCGACAA CGAGTTTACT
AACGATCTCG ATGGTGCCTT AACAGATCTC AGTGTGGGTA ACTCTTGGGG CGTTGCTGCA
CAAGTGGGTC TGGATTACCA AATCAACAAA AGCTGGTTGG TGAATGCTTC TGTTTGGTAC
GCAAAGATTA GCACTGATGT TGATTTCAAA CTGTCAGGTG ATGCCGTGAC GATTGAAACA
GATGTAGACC CATGGGTTTA CATGGTAAGT GTGGGTTACA CCTTCTAA
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| Protein sequence | MMNKTIVSGL IAAALLSTGF ASSVSAHQAG DIIIRAGVAV VAPNESSQDV AGNGEFGVDD
NTQLGLNFGY MLTDNIGIEL LAASPFTHDI SLDGIGKIAE TKQLPPTLVA QYYFGSADSK
LRPYIGAGVN FTNFFDNEFT NDLDGALTDL SVGNSWGVAA QVGLDYQINK SWLVNASVWY
AKISTDVDFK LSGDAVTIET DVDPWVYMVS VGYTF
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