Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1467 |
Symbol | |
ID | 5610758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1741906 |
End bp | 1742295 |
Gene Length | 390 bp |
Protein Length | 129 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932333 |
Product | hypothetical protein |
Protein accession | YP_001473206 |
Protein GI | 157374606 |
COG category | [S] Function unknown |
COG ID | [COG3126] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000434659 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000172083 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATGAAAA GAGCCCTTGT ATTAATTTGT ATGATGATGC TTTCTGCCTG TGTCACTGTA ACTGAAGATA AACCGATAAT CGTCAATGGC GCCGCAGGTT ATCTGGAGAA GATTGCCTTG CCTAATGGAA GTTCAATCAC CATTGCTATT ATCGATATGG ATACACCCGG TGCTATTATC GCTCAGAAGA GCTTTGATAT CGCTCGCGCA CCGGTGCCAT TTAAATTTAT TCTGCCGTCT GATACGGTGA GTTCCAGCAT CAACTACGGG GTTGTCTCCA TGATTCAATA TCAAGGGGGC GTGATCTTTC AAACCTACGA TCGTTTCCCT GTGATAAATA ATGGAATATA CACGACGGAA GTTGTGATGA AGGCGGTGCC GATTAAGTAG
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Protein sequence | MMKRALVLIC MMMLSACVTV TEDKPIIVNG AAGYLEKIAL PNGSSITIAI IDMDTPGAII AQKSFDIARA PVPFKFILPS DTVSSSINYG VVSMIQYQGG VIFQTYDRFP VINNGIYTTE VVMKAVPIK
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