Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1454 |
Symbol | |
ID | 5610894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1724127 |
End bp | 1725017 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640932320 |
Product | pyruvate carboxyltransferase |
Protein accession | YP_001473193 |
Protein GI | 157374593 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.119329 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTCCAA ATCAGGTCAG TATTTTCGAA GTTGGCGCCC GTGACGGCTT ACAAAATGAA AAGAGTGTCA GCACGCAAGA CAAGATAGCC TTAATAGAAG GTTTAGCCAA TGCTGGCATC AAGCGTATCG AGGCTGCGAG CTTTGTCTCT CCCAAGTGGG TACCACAGAT GGCCGACTCG GGAGAGGTGC TTAAAAACAT CAACCGAAAC AGCGCCGTGA CCTACAGCGC CTTGACCCCC AACTTAAAGG GACTGGAACT TGCCCTTGAC GCGGGAGCCG ACGAAGTCGC CATATTCGGT GCCGCTTCTC AAAGCTTCAG TCAACGCAAC ATCAACTGCT CCATCGAGGA GTCGATAGAG CGCTTTATTC CTGTAATAGA GCGGGCTCAG GCTGCTAATG TTCCGGTCAG AGGCTATGTG TCCTGTGTGC TGGGCTGCCC CTATGAAGGA GATATCCCCT CGAGTGAAGT CGCTCGGGTG TCTGAAATCC TTTACAAGAT GGGCTGTTAT GAAATTTCAC TGGGTGACAC CATAGGCGTT GGCACACCGC ACAATGCCCG TAAAATGGTT GAAGAGGTGA GCCGCAAGGT TCCTGTCGAC AAACTCGCAC TACACTTTCA TGATACCTAC GGCCAGGCAC TGGCCAACAT TCTGGCCTGT TTAGAAACCG GAGTGAGCGT TATCGACTCT TCGGTTGCGG GCCTCGGTGG CTGCCCCTAT GCCAAAGGTG CATCGGGTAA CTTAGCCACC GAAGATTTAG TCTATATGTT GCATGGATTA GGGATAGATA CCGGCATCGA TCTGCGCTTG TTAGCGAGTG CAGGAGATGC AATAAGTCAG ACACTGGGCA AAACAACCGG CTCAAAGGTC GCTCAAGCGA TGGGCAAATA A
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Protein sequence | MLPNQVSIFE VGARDGLQNE KSVSTQDKIA LIEGLANAGI KRIEAASFVS PKWVPQMADS GEVLKNINRN SAVTYSALTP NLKGLELALD AGADEVAIFG AASQSFSQRN INCSIEESIE RFIPVIERAQ AANVPVRGYV SCVLGCPYEG DIPSSEVARV SEILYKMGCY EISLGDTIGV GTPHNARKMV EEVSRKVPVD KLALHFHDTY GQALANILAC LETGVSVIDS SVAGLGGCPY AKGASGNLAT EDLVYMLHGL GIDTGIDLRL LASAGDAISQ TLGKTTGSKV AQAMGK
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