Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1434 |
Symbol | |
ID | 5609844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1699270 |
End bp | 1699890 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932300 |
Product | tetratricopeptide TPR_4 |
Protein accession | YP_001473173 |
Protein GI | 157374573 |
COG category | [S] Function unknown |
COG ID | [COG2976] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000778847 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.941681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAAATTT ATAGCACAGA AGAACAACAA GTAGATGCTA TCAAACAGTT CTGGAAAGAT TATGGCACAT CCATAGTCGT AGGTGCTGTG GTCGGTCTTG GCGGTTTATT CGGTTGGAAC TATTACTCAG AATACAAGGT GGCAAAAGCC GAGTCGGCTT CTGAAGCATT TCAGGCCATG AGTGGCAGTG CAACTTCAGA TGCCGCTATG CTGAGTGCGG CTGAAAACTT CGCTAAAGAT CATAGCCAGA AAGGTTATCA ATCACTGTTA TCACTTATCG TTGCGAAAGC GGCGGTTGAG TCTGGCGATC TGGACAAGGC TGAAGCGGCG CTGAAAAGCG TGATCGGATC GGCACCCGAT GCCAGTTTAG TTATGGTCGC GACGATGCGT TTAGCTCGTG TTCAAGCCGA ACAGGGGCAG GTCGCGACAG CGATCACGAC TCTTGAGCAA GTTTCAGACC CTGCATTTAT CGCTCAAAAA GAAGAACTTA AAGGTGATTT CCTGGTTCGT AAAGGTGAAG CCGAGCTAGC CAAAGCCGCT TATCAAGCTG CAGTAGATAA TGGTGGGGCG ACATCAAGCC CTGCTTTACA GATGAAGCTA GATAATTTAA ATAAGGCATA A
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Protein sequence | MEIYSTEEQQ VDAIKQFWKD YGTSIVVGAV VGLGGLFGWN YYSEYKVAKA ESASEAFQAM SGSATSDAAM LSAAENFAKD HSQKGYQSLL SLIVAKAAVE SGDLDKAEAA LKSVIGSAPD ASLVMVATMR LARVQAEQGQ VATAITTLEQ VSDPAFIAQK EELKGDFLVR KGEAELAKAA YQAAVDNGGA TSSPALQMKL DNLNKA
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