| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1388 |
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| Symbol | |
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| ID | 5613158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1650208 |
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| End bp | 1650735 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932253 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001473127 |
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| Protein GI | 157374527 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCGA AGAACTGCTC AAGTTCGCAT GGATTTACGC TTATAGAACT CGTCGTCGTT
ATTGTTATAT TGGGAATTCT GGCTGTCACC TCGTCCAGTA AATTCATTAG CCTGAGCGGC
GATGCTAAAG ATGCTGTGTT GCAACAATTC GGCGCCTCCG TTGTTGAGGC AAATAAGCAG
ATGTATATCT TATCTAAACT CTCCAGCTAC CGGGCTCAGC CCGTACCGGG TCGTGGCGAT
CTTACCGATG TAGATGTTGA CGGTGATGGT GTATTCGAAA CTCGTTTAAA ATGCGGATAT
CTGGATAATA CCGATGTGGC TAAGAGATTA AATTACAGCG ATGACCGTTT AGGCTTTGAA
TTTGAGGGTG TCGATAAGGT CTACTTTGGC TTTGACCAGA GTGATATCAA ATCCGGTCAA
TGTTATTTTA TGTACCAGCA AGCCTACGGT ACGACTAATC CCGCTACCTG CAATCAGGAT
GACCCAAAAG CCGCGCCGGT TTATGAGGTG GTGATTGAAG GCTGTTGA
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| Protein sequence | MDSKNCSSSH GFTLIELVVV IVILGILAVT SSSKFISLSG DAKDAVLQQF GASVVEANKQ
MYILSKLSSY RAQPVPGRGD LTDVDVDGDG VFETRLKCGY LDNTDVAKRL NYSDDRLGFE
FEGVDKVYFG FDQSDIKSGQ CYFMYQQAYG TTNPATCNQD DPKAAPVYEV VIEGC
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