| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1387 |
|---|
| Symbol | |
|---|
| ID | 5613157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1649570 |
|---|
| End bp | 1649956 |
|---|
| Gene Length | 387 bp |
|---|
| Protein Length | 128 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932252 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473126 |
|---|
| Protein GI | 157374526 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2259] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCAAA AATTGGTGAC TGTGGGGCGG GTAATGCTGG CGCTTTATTT CTTATTGCCC
GGTATTATGA AGTTTGTCAG CTGGGATATG CATATAACCT TAATGGAAAC CCATGGGATG
ATCATGGCTC CTCAACTGCT GGCTGCGGCG GCAATATTTG AGATCGTTGC CGCCATCGCC
CTGTTAATGA ACCGCTATAC CGCGCTTGTA TCGATACTGC TTGCACTGCT TGTGGTGGTG
ATAAATGTCA GCTTGCATGA TTTTTGGAAC TTCACCGGAA TCGAAGCCGC CCATGAGATG
CAAAACTTCA TTAAAAATCT CGGGATCCTG GCAGGACTGC TTGTATTAGC TGGGCACTGC
GGAGAAAAAT CCAAAGCTAA AAACTAA
|
|---|
| Protein sequence | MNQKLVTVGR VMLALYFLLP GIMKFVSWDM HITLMETHGM IMAPQLLAAA AIFEIVAAIA
LLMNRYTALV SILLALLVVV INVSLHDFWN FTGIEAAHEM QNFIKNLGIL AGLLVLAGHC
GEKSKAKN
|
|---|
| |