| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1380 |
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| Symbol | |
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| ID | 5612701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1639581 |
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| End bp | 1640153 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932245 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001473119 |
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| Protein GI | 157374519 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATGCAT CAAGTGTTAC TTTAAAAGCA GATTCAGGTT TTACCTTAGT CGAACTCGTG
ATAGTAATAG TGATTTTGGG CATTTTGTCA GTGGTTGCGG CGCCCAAGTT TATCAATTTA
AAAAGTGATG CTCACCGTTC GGTATTAAAT GGTGTAAGAG GGGCTATCTC AAGCGGAAAC
CAGCTGGTTT ACTCTAAAGC TGTGCTACAG GGAAAAGAGC GGCAAGCTGT GGCCGACGTT
CAACTGGGAG GAAGCTTAGG CAGCGCCGTA TTGACCTATG GTCATATCCC TTCCTCTTTG
CCAGTGTCAC AAAAAGCCAG CACAAAGAAC ATTGATAGTG CCGCCGTATA TGAAAGTATT
ACTCAGATTC TGGCATTAGA TGCTGAACAT CTCAAGGATG AGTCCTCTGT CGCTACTCGC
CAGTGGGGTA TTTATATTGA AGGCGGCAGT GATAAATTTG TAAATTTTGT GCCAAGAGGT
TTATCTGTCG ATTCTGAGTG TCACCTGCAA TATACGGGTA TAAATGGAGA AGGAGAAGCC
GTTATGTTGA CATTAATCGA CAATGGTTGT TAA
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| Protein sequence | MHASSVTLKA DSGFTLVELV IVIVILGILS VVAAPKFINL KSDAHRSVLN GVRGAISSGN
QLVYSKAVLQ GKERQAVADV QLGGSLGSAV LTYGHIPSSL PVSQKASTKN IDSAAVYESI
TQILALDAEH LKDESSVATR QWGIYIEGGS DKFVNFVPRG LSVDSECHLQ YTGINGEGEA
VMLTLIDNGC
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