Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1373 |
Symbol | |
ID | 5611402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1629652 |
End bp | 1632789 |
Gene Length | 3138 bp |
Protein Length | 1045 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640932238 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001473112 |
Protein GI | 157374512 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGTT TCTTTATAAA TCGTCCTAAT TTCGCCGTCG TCATAGCCCT GTTTATGACC ATTATCGGCA TGATTGCCAT CACTCAGCTT CCTGTGGGTC AATATCCTAA TGTTGCGCCT CCTACCGTGA TGGTTTACGT CAACATGGAT GGGGGCTCAA CCGATGTGAT GCAAAAATCG GTCGCGTCAA TTATCGAAAA AGAGGTCAAT GGCGTAGAAG GCATGACCTA TATGAAATCC AATATCGGTA ATGACGGTAC CTATTCTCTT GAAGTAAGTT TTGAGATTGG TATCGATGCC GACAGAGCGG TGACTTTAGT TCAAAACCGG GTCAACAAAT CGATCTCTCG TTTGCCCGAT GGCGCGCGCC GCTATGGTGT AACCGTCGAG AAGGTCTCTT CAGGCATGCT GATGGCTTTT AGTGTACGTG ATGATAGCGG GAAAATGGAT GCCATCGAGC TGTCAAATTG GACCTCTGTG ATGCTTAAGG AGGGGTTGCA GCGTATCTCA GGAGTCTCTC GGGTGATGGT TATCGGAGAG AAGAACTACT CTATGCGTAT CTGGCTCGAT CCCTCTAAGA TGAGCGCGCT GGGTATCGCA GTGGAAGATG TACAGGCGGC CTTGCTTGAG CAGAACCAAA TATTGGCCGC CGGCCGTTCG GGTATCGAGC CCAGTGCAGA GATGCATTCC TGGGAGTATA CATTTAAGGT CGAAAGCGCA CTCTCATCAC CCGAACAGTT TAGTGAGGTC ATTGTTCGCT CGGATCAATA TGGACTCGTC AAAGTGAAAG ATATCGCCAA GGTTGAACTT GGCTCCGTGC AATATATGGC TAACACCTAC CACAACAACC AAGCTGCCTC CACGGTATTT ATGTACCGTT CTCCGACCTC AAATGCGATG GATGTAGGTA ATGCGGTGAA AGCGTACCTG AGTTCGGCAG CTTTACCCGA TGGTATGAAA ATCGATATCC CCTATGATGG TACGGTATTC GTTCAGGCCG CGATTGACGA TATTTTCAGT ACCCTGCGTG ATGCCGTTAT CTTAGTTACG CTAATTACCC TGCTGTTCCT GCAAAGCTGG CGTGTCACAT TAATTACGGC GGCTGCGATT CCGGTCTCCT TGATCACCAC CTTTGCCGTT ATGCTCGCGG CGGGCATGAC CATTAACATC ATCAGTATGT TTGGTTTGAT CTTGGCGATT GGTATTGTGG TCGATGCGGC AATTATTGTG ATTGAAAACG TCGAACGATT GCTGGAGGAG GATCTAGAGC TCAGTGTTAA AGATGCAGTG TTAAATTCGA TGAAAGAGGT AACGGGGCCT ATCATCGCCT CCATGTTGGT GTTGTTATCT GTTTTCGGAC CGACTCTGTT TATGCCGGGG ATGACTGGGA TCTTATACGG TCAGTTTGGT ATCGCCATCT GTGCAGCGGT CGTGATCTCC ACCATAGTCG CGCTGGTGTT GACACCTGTG ATGTGTGTCT TATTGATGAG ACGTGGTGAG TCGAAGAAGA TCTGGCTATT TAGGGTGTTC AATAAAGGGG TCGATAAAAC CCGAGATGGT TTCGGCACAA CGGTCCAATT TTTGGGGCGT CGCTTCGCTT TATCCGGAGT ACTCTTTGTG GGTCTAATCG GTGCTATCTA TTTCCTGGGG GCGAACACCT CTACCGGTTT CCTGCCCGAA GAGGATAAAG GCACTTTGTT TGCGGTGGTG ATGTTGCCCG ATGGCGCCGC ACTGCATCGT ACCGATAAGG CTCTGAAGTC GCTATCAGAA AAGGTTCAGC ATATTGAAGG TGTCAAGACG GTGTTGTCGG CATCGGGTTT TAATCTGATA ACCAATACAT CGGGCTCAAA TGCCGGTCTA TTGTTAATTT CGCTCGATGA GCTGGAGTTG CGTCGAGGCC AGGTTGGACT GGATCAATGG ACTGTACTTG CACAAATCCA AGCCACTATC GATGCTAATG ATGAGGTGTA TGGTTTTGCC TTCTCACCAC CTGCGATTCC CGAGCTGGGT TTAGTATCAG GCTTCGACTT GATGTTTAAA GATAAGATGG GACGGGATCC TGCCGAGCTT GCCGAGGCGG CCAACACCTT CATTGCCCAA ATTAATGAAG ATCCCAGAGT TGTGGGAGCC TATACGACTT TCAACGCTAA TACGCCCAAT ATCATGCTCG ATATCGATCG TGAGAAGATC AAGATGCTGG GTCTGCGCAT GGATCAAGTG TTCAACACCA TTCAGGCGCA ATTTGCAGGC GCTTATGCCG GTGAGTTCAA TAGAGAGGGA CGTAATTTCT ATGTCTTCGT TCAGGCCGAA CAGGTTAACC GTAAGAATAT TGAAGATCTT AACTATCTGA CGGTTCGAAA CGATAACGGC GATTTGATCA ACATCAGCTC CTTGGTGACT CCAAAAATTG TGTTTGGGCC TCAGGTTATC CAGCAGTTTA ACTTGATGCA GGCGGTGAAT ATCAATGGTT ACCCGGCTCC GGGCTATGCT TCGGGAGATG CGATCGCTGC CGTTGAAGAG GCCGCGAAGG CTCTGCCAGA AGGTTATGAG ATTGAGTGGG CGGGTCTGAC TAAGCAGGAG TTGGCGGCGG GAGATTCGGC GGTTATCGCC TTCATGCTTG CCATCTTGTT TACCTACCTG TTATTGGTGG CGCAATATGA GTCCTGGGTC GTCGCCCTGT GTATCATCTT GTGTGTTCCT ACGGCCCTGC TAGGCACCTT GTTTACCGTC TTTGCCATGG GAGCCGATAT CAATATCTAT GTCCAGATAG CTATGGTGTT GATGGTGGGA ATGGCGGCGA GAAACGCTAT CTTGATTGTC GAGTTTGCCA AGCTACTACG TGAAGAGCAG GGCTATAGTA TCGTCGATGC TGCGGTGACC GCGACCAAAT TGCGTTTCCG CGCGGTAATG ATGACGGCGA TGAGCTTTAT CCTCGGGCTG GTGCCGCTGA TGTTTTCCGA TGGAGCGGGT TACGCCGCAC AGCAGGCGAT CGGTTGGGCG GCTTGCGGAG GCATGATATC GGCGACCTTT ATCGGTCTCA TTGTTGTACC GGTACTCTAT ATCATGCTGC AAACTTTACG TGAAAAGTGT GTCAAGGTTG AGCTGCAATC ATCCGCTACG CTTGTACCCT CAAGCTAG
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Protein sequence | MSRFFINRPN FAVVIALFMT IIGMIAITQL PVGQYPNVAP PTVMVYVNMD GGSTDVMQKS VASIIEKEVN GVEGMTYMKS NIGNDGTYSL EVSFEIGIDA DRAVTLVQNR VNKSISRLPD GARRYGVTVE KVSSGMLMAF SVRDDSGKMD AIELSNWTSV MLKEGLQRIS GVSRVMVIGE KNYSMRIWLD PSKMSALGIA VEDVQAALLE QNQILAAGRS GIEPSAEMHS WEYTFKVESA LSSPEQFSEV IVRSDQYGLV KVKDIAKVEL GSVQYMANTY HNNQAASTVF MYRSPTSNAM DVGNAVKAYL SSAALPDGMK IDIPYDGTVF VQAAIDDIFS TLRDAVILVT LITLLFLQSW RVTLITAAAI PVSLITTFAV MLAAGMTINI ISMFGLILAI GIVVDAAIIV IENVERLLEE DLELSVKDAV LNSMKEVTGP IIASMLVLLS VFGPTLFMPG MTGILYGQFG IAICAAVVIS TIVALVLTPV MCVLLMRRGE SKKIWLFRVF NKGVDKTRDG FGTTVQFLGR RFALSGVLFV GLIGAIYFLG ANTSTGFLPE EDKGTLFAVV MLPDGAALHR TDKALKSLSE KVQHIEGVKT VLSASGFNLI TNTSGSNAGL LLISLDELEL RRGQVGLDQW TVLAQIQATI DANDEVYGFA FSPPAIPELG LVSGFDLMFK DKMGRDPAEL AEAANTFIAQ INEDPRVVGA YTTFNANTPN IMLDIDREKI KMLGLRMDQV FNTIQAQFAG AYAGEFNREG RNFYVFVQAE QVNRKNIEDL NYLTVRNDNG DLINISSLVT PKIVFGPQVI QQFNLMQAVN INGYPAPGYA SGDAIAAVEE AAKALPEGYE IEWAGLTKQE LAAGDSAVIA FMLAILFTYL LLVAQYESWV VALCIILCVP TALLGTLFTV FAMGADINIY VQIAMVLMVG MAARNAILIV EFAKLLREEQ GYSIVDAAVT ATKLRFRAVM MTAMSFILGL VPLMFSDGAG YAAQQAIGWA ACGGMISATF IGLIVVPVLY IMLQTLREKC VKVELQSSAT LVPSS
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