Gene Ssed_1373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1373 
Symbol 
ID5611402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1629652 
End bp1632789 
Gene Length3138 bp 
Protein Length1045 aa 
Translation table11 
GC content50% 
IMG OID640932238 
Producthydrophobe/amphiphile efflux-1 (HAE1) family protein 
Protein accessionYP_001473112 
Protein GI157374512 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGTT TCTTTATAAA TCGTCCTAAT TTCGCCGTCG TCATAGCCCT GTTTATGACC 
ATTATCGGCA TGATTGCCAT CACTCAGCTT CCTGTGGGTC AATATCCTAA TGTTGCGCCT
CCTACCGTGA TGGTTTACGT CAACATGGAT GGGGGCTCAA CCGATGTGAT GCAAAAATCG
GTCGCGTCAA TTATCGAAAA AGAGGTCAAT GGCGTAGAAG GCATGACCTA TATGAAATCC
AATATCGGTA ATGACGGTAC CTATTCTCTT GAAGTAAGTT TTGAGATTGG TATCGATGCC
GACAGAGCGG TGACTTTAGT TCAAAACCGG GTCAACAAAT CGATCTCTCG TTTGCCCGAT
GGCGCGCGCC GCTATGGTGT AACCGTCGAG AAGGTCTCTT CAGGCATGCT GATGGCTTTT
AGTGTACGTG ATGATAGCGG GAAAATGGAT GCCATCGAGC TGTCAAATTG GACCTCTGTG
ATGCTTAAGG AGGGGTTGCA GCGTATCTCA GGAGTCTCTC GGGTGATGGT TATCGGAGAG
AAGAACTACT CTATGCGTAT CTGGCTCGAT CCCTCTAAGA TGAGCGCGCT GGGTATCGCA
GTGGAAGATG TACAGGCGGC CTTGCTTGAG CAGAACCAAA TATTGGCCGC CGGCCGTTCG
GGTATCGAGC CCAGTGCAGA GATGCATTCC TGGGAGTATA CATTTAAGGT CGAAAGCGCA
CTCTCATCAC CCGAACAGTT TAGTGAGGTC ATTGTTCGCT CGGATCAATA TGGACTCGTC
AAAGTGAAAG ATATCGCCAA GGTTGAACTT GGCTCCGTGC AATATATGGC TAACACCTAC
CACAACAACC AAGCTGCCTC CACGGTATTT ATGTACCGTT CTCCGACCTC AAATGCGATG
GATGTAGGTA ATGCGGTGAA AGCGTACCTG AGTTCGGCAG CTTTACCCGA TGGTATGAAA
ATCGATATCC CCTATGATGG TACGGTATTC GTTCAGGCCG CGATTGACGA TATTTTCAGT
ACCCTGCGTG ATGCCGTTAT CTTAGTTACG CTAATTACCC TGCTGTTCCT GCAAAGCTGG
CGTGTCACAT TAATTACGGC GGCTGCGATT CCGGTCTCCT TGATCACCAC CTTTGCCGTT
ATGCTCGCGG CGGGCATGAC CATTAACATC ATCAGTATGT TTGGTTTGAT CTTGGCGATT
GGTATTGTGG TCGATGCGGC AATTATTGTG ATTGAAAACG TCGAACGATT GCTGGAGGAG
GATCTAGAGC TCAGTGTTAA AGATGCAGTG TTAAATTCGA TGAAAGAGGT AACGGGGCCT
ATCATCGCCT CCATGTTGGT GTTGTTATCT GTTTTCGGAC CGACTCTGTT TATGCCGGGG
ATGACTGGGA TCTTATACGG TCAGTTTGGT ATCGCCATCT GTGCAGCGGT CGTGATCTCC
ACCATAGTCG CGCTGGTGTT GACACCTGTG ATGTGTGTCT TATTGATGAG ACGTGGTGAG
TCGAAGAAGA TCTGGCTATT TAGGGTGTTC AATAAAGGGG TCGATAAAAC CCGAGATGGT
TTCGGCACAA CGGTCCAATT TTTGGGGCGT CGCTTCGCTT TATCCGGAGT ACTCTTTGTG
GGTCTAATCG GTGCTATCTA TTTCCTGGGG GCGAACACCT CTACCGGTTT CCTGCCCGAA
GAGGATAAAG GCACTTTGTT TGCGGTGGTG ATGTTGCCCG ATGGCGCCGC ACTGCATCGT
ACCGATAAGG CTCTGAAGTC GCTATCAGAA AAGGTTCAGC ATATTGAAGG TGTCAAGACG
GTGTTGTCGG CATCGGGTTT TAATCTGATA ACCAATACAT CGGGCTCAAA TGCCGGTCTA
TTGTTAATTT CGCTCGATGA GCTGGAGTTG CGTCGAGGCC AGGTTGGACT GGATCAATGG
ACTGTACTTG CACAAATCCA AGCCACTATC GATGCTAATG ATGAGGTGTA TGGTTTTGCC
TTCTCACCAC CTGCGATTCC CGAGCTGGGT TTAGTATCAG GCTTCGACTT GATGTTTAAA
GATAAGATGG GACGGGATCC TGCCGAGCTT GCCGAGGCGG CCAACACCTT CATTGCCCAA
ATTAATGAAG ATCCCAGAGT TGTGGGAGCC TATACGACTT TCAACGCTAA TACGCCCAAT
ATCATGCTCG ATATCGATCG TGAGAAGATC AAGATGCTGG GTCTGCGCAT GGATCAAGTG
TTCAACACCA TTCAGGCGCA ATTTGCAGGC GCTTATGCCG GTGAGTTCAA TAGAGAGGGA
CGTAATTTCT ATGTCTTCGT TCAGGCCGAA CAGGTTAACC GTAAGAATAT TGAAGATCTT
AACTATCTGA CGGTTCGAAA CGATAACGGC GATTTGATCA ACATCAGCTC CTTGGTGACT
CCAAAAATTG TGTTTGGGCC TCAGGTTATC CAGCAGTTTA ACTTGATGCA GGCGGTGAAT
ATCAATGGTT ACCCGGCTCC GGGCTATGCT TCGGGAGATG CGATCGCTGC CGTTGAAGAG
GCCGCGAAGG CTCTGCCAGA AGGTTATGAG ATTGAGTGGG CGGGTCTGAC TAAGCAGGAG
TTGGCGGCGG GAGATTCGGC GGTTATCGCC TTCATGCTTG CCATCTTGTT TACCTACCTG
TTATTGGTGG CGCAATATGA GTCCTGGGTC GTCGCCCTGT GTATCATCTT GTGTGTTCCT
ACGGCCCTGC TAGGCACCTT GTTTACCGTC TTTGCCATGG GAGCCGATAT CAATATCTAT
GTCCAGATAG CTATGGTGTT GATGGTGGGA ATGGCGGCGA GAAACGCTAT CTTGATTGTC
GAGTTTGCCA AGCTACTACG TGAAGAGCAG GGCTATAGTA TCGTCGATGC TGCGGTGACC
GCGACCAAAT TGCGTTTCCG CGCGGTAATG ATGACGGCGA TGAGCTTTAT CCTCGGGCTG
GTGCCGCTGA TGTTTTCCGA TGGAGCGGGT TACGCCGCAC AGCAGGCGAT CGGTTGGGCG
GCTTGCGGAG GCATGATATC GGCGACCTTT ATCGGTCTCA TTGTTGTACC GGTACTCTAT
ATCATGCTGC AAACTTTACG TGAAAAGTGT GTCAAGGTTG AGCTGCAATC ATCCGCTACG
CTTGTACCCT CAAGCTAG
 
Protein sequence
MSRFFINRPN FAVVIALFMT IIGMIAITQL PVGQYPNVAP PTVMVYVNMD GGSTDVMQKS 
VASIIEKEVN GVEGMTYMKS NIGNDGTYSL EVSFEIGIDA DRAVTLVQNR VNKSISRLPD
GARRYGVTVE KVSSGMLMAF SVRDDSGKMD AIELSNWTSV MLKEGLQRIS GVSRVMVIGE
KNYSMRIWLD PSKMSALGIA VEDVQAALLE QNQILAAGRS GIEPSAEMHS WEYTFKVESA
LSSPEQFSEV IVRSDQYGLV KVKDIAKVEL GSVQYMANTY HNNQAASTVF MYRSPTSNAM
DVGNAVKAYL SSAALPDGMK IDIPYDGTVF VQAAIDDIFS TLRDAVILVT LITLLFLQSW
RVTLITAAAI PVSLITTFAV MLAAGMTINI ISMFGLILAI GIVVDAAIIV IENVERLLEE
DLELSVKDAV LNSMKEVTGP IIASMLVLLS VFGPTLFMPG MTGILYGQFG IAICAAVVIS
TIVALVLTPV MCVLLMRRGE SKKIWLFRVF NKGVDKTRDG FGTTVQFLGR RFALSGVLFV
GLIGAIYFLG ANTSTGFLPE EDKGTLFAVV MLPDGAALHR TDKALKSLSE KVQHIEGVKT
VLSASGFNLI TNTSGSNAGL LLISLDELEL RRGQVGLDQW TVLAQIQATI DANDEVYGFA
FSPPAIPELG LVSGFDLMFK DKMGRDPAEL AEAANTFIAQ INEDPRVVGA YTTFNANTPN
IMLDIDREKI KMLGLRMDQV FNTIQAQFAG AYAGEFNREG RNFYVFVQAE QVNRKNIEDL
NYLTVRNDNG DLINISSLVT PKIVFGPQVI QQFNLMQAVN INGYPAPGYA SGDAIAAVEE
AAKALPEGYE IEWAGLTKQE LAAGDSAVIA FMLAILFTYL LLVAQYESWV VALCIILCVP
TALLGTLFTV FAMGADINIY VQIAMVLMVG MAARNAILIV EFAKLLREEQ GYSIVDAAVT
ATKLRFRAVM MTAMSFILGL VPLMFSDGAG YAAQQAIGWA ACGGMISATF IGLIVVPVLY
IMLQTLREKC VKVELQSSAT LVPSS