| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1353 |
|---|
| Symbol | |
|---|
| ID | 5611733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1608663 |
|---|
| End bp | 1609946 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932218 |
|---|
| Product | excitatory amino acid transporter |
|---|
| Protein accession | YP_001473092 |
|---|
| Protein GI | 157374492 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTAC ATTGGCAGAT CTTGATTGCC ATCTTACTGG CTATCTTAGT CGGTATTATG
ACAGTCCCCG AAAGTGCGAT TTATGAAATT TATGATTTCA TCGGCACTAT GTTTCTCAAT
GCCCTCAAGA TGGTAATCGT GCCTCTGATC ATGTCATCCA TTATCTCGAG TATGGCTGGT
CTCAATCATG GCGATAGTTT AGGGAGACTC GGGCTAAAGA CAATGGCTTA TTACACCATG
ACCAGTCTGT TAGCCATCTT AATAGGCTTG ACCTTAGTCA ATATTACTCT GCCGGGGATT
ATCGATGGGC AACCCGCTGG TGATTTGCTC AACCTCAATA CTAACAGCGC TGAGGTTGCG
TCGACACTAA GTCAGGTTGA GGGGCGAGGG AGTAAAGATC TGGTTGAGAT CTTTGTCAGA
ATGATCCCGA CCAATATTGT AGAGGCGGCA AGTGAAGGTC AGATGTTAGG CCTTATTTTT
TTCAGTCTAC TGTTTGGTTT CTTTATGGGG CGCGTCGAGG GGCGCAGGGG AGAGGTACTA
CGGGACTTTT GGAAAGGCGT CGCGAAAACG ATGGTGCTTA TTACTCAGTT TGTCCTTAAG
TTTGCTCCTC TGGGAATATT TGCATTGATA GCAAAGACGG TGAGTGCAAC AGGCTTTAAT
GCTTTTGAGC CTATGTTGGT ATTTCTGTTT ACGGTCATCA TCTCCCTGGC GCTGCACGCG
TTTATTGTTT TACCTCTGCT GCTTAAATTC GTCGGCAGAG TAAGCCCCAT AAAGCAGATT
GTGGCTATGT CTCCGGCGAT GTTAATGGCG TTTTCAACGG CCTCCTCTTC TGCGACTCTG
CCATTGACCA TGCAGTGCAT ACAAAAGCGA GCCGGAGTAT CGAGAAAAAC CGCAAGCTTT
GTTTTACCTT TGGGGGCTAC GGTCAATATG GACGGCACGG CGCTTTATGA GTGTGTGGCC
GCGATGTTTA TTGCCCAAGC CTATGGTTTG GAGCTCGGGT TTATCACCCA ATTTACCATT
GTGTTAGTGG CTCTGCTCAC TTCAATTGGG GTCGCGGGTA TTCCGGCTGC CAGCCTGGTG
GCCATTACCG TGATTTTAGG GGCAATAGGT TTACCTCTTG AAGCGATAGG TTTACTGCTG
GTGACTGATA GAATACTGGA TATGCTACGA ACATCGGTAA ATGTATTCAG TGATGCGTGT
GGAACCGTGA TAATCGCAAA ATCAGAGGGG GAGAGCTGGG TGCTCAATCA AGACAGTGAA
GTGGTCGAGG CTGTGGGAGA TTGA
|
|---|
| Protein sequence | MKLHWQILIA ILLAILVGIM TVPESAIYEI YDFIGTMFLN ALKMVIVPLI MSSIISSMAG
LNHGDSLGRL GLKTMAYYTM TSLLAILIGL TLVNITLPGI IDGQPAGDLL NLNTNSAEVA
STLSQVEGRG SKDLVEIFVR MIPTNIVEAA SEGQMLGLIF FSLLFGFFMG RVEGRRGEVL
RDFWKGVAKT MVLITQFVLK FAPLGIFALI AKTVSATGFN AFEPMLVFLF TVIISLALHA
FIVLPLLLKF VGRVSPIKQI VAMSPAMLMA FSTASSSATL PLTMQCIQKR AGVSRKTASF
VLPLGATVNM DGTALYECVA AMFIAQAYGL ELGFITQFTI VLVALLTSIG VAGIPAASLV
AITVILGAIG LPLEAIGLLL VTDRILDMLR TSVNVFSDAC GTVIIAKSEG ESWVLNQDSE
VVEAVGD
|
|---|
| |