| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1334 |
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| Symbol | |
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| ID | 5610319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1586714 |
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| End bp | 1588438 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932199 |
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| Product | putative sulfate transporter YchM |
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| Protein accession | YP_001473073 |
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| Protein GI | 157374473 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0659] Sulfate permease and related transporters (MFS superfamily) |
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| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor
[TIGR00815] high affinity sulphate transporter 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.817877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.258167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCACACA GAGCCCATCT TTTTTCATTA ACCCTCGGCC ATGCGCTATA TCAATCCTGC
ATAAAAAATG GCTATCAATT AAAAAACTTT AAACAGGATA TTCTTGCCGG CATCTCGGTC
GGGATCATTG CCATCCCCTT AGCGATGGCG CTCGCTATCG CCAGTGGTGT GCCTCCTCAA
TACGGTCTTT ATACCGCTAT TGTCGCAGGC TTTATCATCG CCATGACTGG TGGGTCCCGA
TATAGCATTT CCGGTCCTAC CGCGGCATTT GTCGTCCTGC TTTATCCCAT CGCCCAGGAA
TTTGGCTTAG CAGGACTGCT TATGGCCACT GTCATGTCAG GGGTGATCTT AGTGATGATG
TCACTATTAA AGCTTGGCCG TCTCATTCAA TATATCCCTG AGCCCGTCAC ACTCGGCTTC
ACCGGCGGTA TTGGGGTGGT CATAGCGACT TTGCAACTTA AAGATTTCTT TGGACTTTCG
AATACTAACC TACCCGAACA TTTTGCCGAC AAGGTACACA CCCTGATATT GGCTATGCCT
TCGGCCGATG GGCCCAGCAC TGTCGTCGCA ATGGTCACAT TATTGGTCAT GCTGATTTGG
CCAAAGCTTA AGACTCAGAT CCCGTCGCAT CTTCCCGCAA TCATGGTTGG TAGTTTACTG
GCCTTAGTGT TAAACGGTTA TGGGGCGGAG ATTGAAACCA TAGGGACACG TTTTCATTAC
GCATTAGCGG ATGGTGGGAC AGGCATGGGG ATCCCTCCCT TTCTACCCAC CTTCGAATTT
CCCTGGTTAC AAAATGGTGC AGATGGTTCC CCGCTGGGAC TCAGCTGGAG CATGGTTCAG
GCGCTCCTCC CCAGCGCGTT CGCCATCGCT ATGCTCGGCG CAATTGAATC ACTTTTATGT
GCGGTAGTTT TAGATGGCAT GACGGGTAAA CGCCATAGTG CAAACAGCGA GCTTCTTGGC
CAGGGGATCG GCAACATAAT CGCGCCCTTC TTTGGTGGGA TCCCCGCAAC GGCCGCCATA
GCCAGAAGTG CCGCCAATGT AAAAGCCGGG GCCTATAGTC CGGTATCTGG CATCATTCAC
TCCCTGGTAC TCTTGATTGG CTTGATCTCA CTGGCCAACA TTCTGGCTTA TCTGCCCATG
CCGGCGATGG CTTCGCTGCT CTTAGTCGTT GCCTGGAACA TGAGCGAAGC CCCCAAGGCC
CTGCACTTAC TCAAGTCAGC ACCTCGCAGT GACATCATTG TCTTTCTCAC CTGCTTCTCC
CTCACAGTGA TCTTTGACAT GGTTATCGCC ATCACCGTAG GGATTGTGCT GGCAGCACTG
CTATTTATGA AAGAGATAGC TGAGATGACA AGGCTTTACG ATATCAGCCA CAATAAAAGA
TATATCGATA AGCCTATTGG GGAAAATTGG CTTGCCTTAA AAATTAACGG GCCGCTATTT
TTTGCTGCAG CCGACGCTAT CTTTTCAGAA ATAACCCTGC TGGCCAAAGG AAAACGGACC
GTCATCCTCT ATATGGACGG CGTATCGATT CTCGATGCAG GGGGATTGGC GGCATTAAAT
AAGCTGCTAG GAAAATTAAA ACAGACAAAT ACACAGCTGG TTATTGCAGA TCTACAGTTT
CAACCCATCA GAACACTGGC AAGAGCTAAG ATACAACCTA TCGACGGCCT GTTATATTTT
TATCCTACCT TAAGGGAAGC CTTAGAGCGG CATTCAAATA ATTAA
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| Protein sequence | MPHRAHLFSL TLGHALYQSC IKNGYQLKNF KQDILAGISV GIIAIPLAMA LAIASGVPPQ
YGLYTAIVAG FIIAMTGGSR YSISGPTAAF VVLLYPIAQE FGLAGLLMAT VMSGVILVMM
SLLKLGRLIQ YIPEPVTLGF TGGIGVVIAT LQLKDFFGLS NTNLPEHFAD KVHTLILAMP
SADGPSTVVA MVTLLVMLIW PKLKTQIPSH LPAIMVGSLL ALVLNGYGAE IETIGTRFHY
ALADGGTGMG IPPFLPTFEF PWLQNGADGS PLGLSWSMVQ ALLPSAFAIA MLGAIESLLC
AVVLDGMTGK RHSANSELLG QGIGNIIAPF FGGIPATAAI ARSAANVKAG AYSPVSGIIH
SLVLLIGLIS LANILAYLPM PAMASLLLVV AWNMSEAPKA LHLLKSAPRS DIIVFLTCFS
LTVIFDMVIA ITVGIVLAAL LFMKEIAEMT RLYDISHNKR YIDKPIGENW LALKINGPLF
FAAADAIFSE ITLLAKGKRT VILYMDGVSI LDAGGLAALN KLLGKLKQTN TQLVIADLQF
QPIRTLARAK IQPIDGLLYF YPTLREALER HSNN
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