Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1329 |
Symbol | |
ID | 5610572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1581345 |
End bp | 1582979 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932194 |
Product | glutamate--cysteine ligase |
Protein accession | YP_001473068 |
Protein GI | 157374468 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2918] Gamma-glutamylcysteine synthetase |
TIGRFAM ID | [TIGR01434] glutamate--cysteine ligase [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR01552] prevent-host-death family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.423999 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0190825 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGATGA AACTAGAGAA AAAAATATTG AACTCTTTCA ATGAACTGAT TGGACATCTC TCTGATTCTG AGGGGCGTAA TGCACTAAAG GGAATGCAGC GTGGAATTGA ACGCGAAGCA TTGAGGATCA ATAGCTCTGG ACACCTTGCT ATAGACGGTC ATCCCAAGGT ACTAGGCTCT GCATTAACTC ACCCAAGGAT CACTACAGAT TACAGTGAAT CTTTGCTTGA GTTTATCACT CCGGTTTTCA GCGATATAAA CAGTTTACTC GACGATCTGA CCTATACTCA CGCTTTCACC GTCCAGAATT TAGATAGCCA GCGCCTCTGG CCTGTCAGCA TGCCTTGTTA TGTGGGCGAT ACGGCAGCGA TTCCTATTGC TGATTATGGC TCCTCAAATG CGGGTCAAAT GAAGCGTTTA TACCGAAAAG GGTTAACCTA TCGTTATGGC GCTCAAATGC AGATTATTTC CGGTGTGCAT TTTAATTTTT CTGTTTCAGA TACCTTGTGG GACAAGCTCT ACAATTTAAG TGATACTCAG GTCTCTAAGA GTGATTTTAT CTCCGAGTCT TATCTGGGGC TCATTCGTAA TTATCGCCAT ATGGTTTGGG TGTTACCCTA TCTGTTTGGC GCATCTCCGG CCTTGTGCAG CTCATTTATT AAAGATCAAC AGACTGATAT TGAATTTGAG AAGATGGGTA AGGGGACATT ATACCTGCCT TACGCCACTT CACTGAGGAT GAGCGATCTC GGCTACACAA ATAAAGAGCA AGAGCAGTTA GACATCAGCT ATGACTCCCT CGAACAGTAT CTGGAGGGGA TGAACAGTGC GATAAACATG CCGTCTGCTA ACTTCGAGAA GATAGGCGTT AAGGTCGATG GCGAATTTCG CCAACTGAAT GCTAACGTAC TCCAGATTGA AAATGAGTTT TACTCGCCTA TCCGTGCTAA ACGTGTGGCT TTAGATGATG AAAAACCTTC AGAGGCACTC GCGCGGGCCG GTATCGAATA TATCGAAGTC AGGGCCTTGG ATGTAAACCC ATACAGCCCT GTGGGTATCG ATGCGTCACA GATCCGATTC CTCGACTTAT TCTTAATGTA TTGTCTGCTA AATGAATCAC CTACATCCGA TTCTGTGCAA GAAAATGAAA TTTCAAATAA CCTTAATCGC GTGGTTTTAG AAGGTCGCAG GCCTGGCCTT GAGTTAAGTC GAAATGGTGA GTCTGTCCTG CTCTCAACTT GGATGAGGGA GATGTTCGAT GAGCTGAAAC CACTTGCGTC GTTACTCGAT AATGAAGGTG AGCATCTCTA TATCGATGCA CTCGACAGAT GGCAAAGTGC TGTGATCGAC CCTGATTTAA CCATCTCGGG GCAGATCATG AAAGAGCTTA ATGGCTCCCA GGTCGATCAT GGTTGTTGGG TCAAAAAATT AGCCGAAGAG TATCATGACA TATTGAGTCG TTACTCCTTG CCAGAGGAGG TGTTGTTGCA ATATCAGCAA GCAGCGAGCC GCTCCTTAGA GAAACAGACA AAGATAGAAT CAGAGTCGAC TCAAAATTTT GAAGAGTATT TAGCCGACTA TTTTAACGAT GACAGCGTTT CATTTGAAAC CCCAAAGGTT GTGAGTTCAG TATGA
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Protein sequence | MMMKLEKKIL NSFNELIGHL SDSEGRNALK GMQRGIEREA LRINSSGHLA IDGHPKVLGS ALTHPRITTD YSESLLEFIT PVFSDINSLL DDLTYTHAFT VQNLDSQRLW PVSMPCYVGD TAAIPIADYG SSNAGQMKRL YRKGLTYRYG AQMQIISGVH FNFSVSDTLW DKLYNLSDTQ VSKSDFISES YLGLIRNYRH MVWVLPYLFG ASPALCSSFI KDQQTDIEFE KMGKGTLYLP YATSLRMSDL GYTNKEQEQL DISYDSLEQY LEGMNSAINM PSANFEKIGV KVDGEFRQLN ANVLQIENEF YSPIRAKRVA LDDEKPSEAL ARAGIEYIEV RALDVNPYSP VGIDASQIRF LDLFLMYCLL NESPTSDSVQ ENEISNNLNR VVLEGRRPGL ELSRNGESVL LSTWMREMFD ELKPLASLLD NEGEHLYIDA LDRWQSAVID PDLTISGQIM KELNGSQVDH GCWVKKLAEE YHDILSRYSL PEEVLLQYQQ AASRSLEKQT KIESESTQNF EEYLADYFND DSVSFETPKV VSSV
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