| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1319 |
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| Symbol | |
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| ID | 5613886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1568610 |
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| End bp | 1568807 |
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| Gene Length | 198 bp |
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| Protein Length | 65 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932172 |
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| Product | carbon storage regulator |
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| Protein accession | YP_001473058 |
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| Protein GI | 157374458 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
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| TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0138416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00721539 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCTGATAT TGACTCGTCG TGTTGGTGAA ACACTGATGA TTGGTGATGA AGTAACTGTC
ACTGTTTTAG GCGTTAAAGG TAATCAAGTA CGTATCGGTG TGAATGCACC TAAAGAAGTC
TCGGTACATC GTGAAGAGAT CTACCAGCGC ATTCAGTCTG AAAAAGCTGG CAACCCTTCT
GAAGGTGGCA ATTTTTAG
|
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| Protein sequence | MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQSEKAGNPS
EGGNF
|
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| |