| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1286 |
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| Symbol | rumA |
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| ID | 5611140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1526890 |
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| End bp | 1528218 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932139 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001473025 |
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| Protein GI | 157374425 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0270354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000011365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCACAGT TTTTTAAAGC AAAACCAAAC AGTTCTAAGC AACTATCGGC AAAAGTTACA
TTAGAAGTGA CTAAATTGGA TCATTTGGGT GCAGGAATGG CACAGCATCA GGGGAAAATT
GTATTTATTC CCGGTGCGCT TCCCAACGAA AAGGTGACCG TACAGCTCAC CGAACAAAAA
AAGCGTCACG CCCGCGCCAA GCTGCTTAAG ATAGAGTCTG ATTCAAATGA CAGAGTCGAA
CCCAAGTGCC CTCATTACCA ACAGTGTGGC GGTTGCGATC TTCAACATCT CTCTATAGAT
AAACAACGCA GCTATAAACA GTCTGCATTG GTCGATCTTA TGGCAAAGCT GAGTCATACC
GAAGCCGAGT CGTTAGCGCC GGCATTAATA GGCCAGGAGT GGGATTATCG CAGGCGTGCT
CGGTTAGCGA CTCACTACAA TAAAGAGAGT AAGCAAATAA CCTTAGGCTT CAGGGCCTCT
GCGAGCAAAC AGGTTATCAA TATCGATGTG TGTCCGGTAC TGGCTAAGCC ATTATCTGAC
TTAATTGCGC CATTATCTCT GTTGCTGAAT CAACTTTCGG GTAAAAAGGC CCTGGGCCAT
CTTGAGTTAA TTGATGCCGA TAATGGCTAT TTTGCCGTAT TAAGGATGAC CAAGGCATTA
TCTGATAAAG ATGCAAAAAA ACTCACGGCC TTCGCGAATG AGAAAAGCAT CAGCTTGATT
GTTCAGGGAA ATGAAGGTGA GTTCACTATT CTGGGTGATC GTAATGAGTT GCCATATTAC
GCTTTGGACG ATGTGAAGCT AAACTTTACT CCCGGTAACT TTATTCAGGT CAATGCTGCC
ATCAATGAAT CTATGGTGAA GCAGGCCGTA GATTGGCTGT CAGTAAAGCC AAATGAACGG
GTGTTAGACC TGTTTTGCGG TGTAGGTAAT TTCAGCCTGC CACTGGCAAA ATCCGGCGCC
GAAGTCATTG GTGTCGAAGG TGTTCCCGAG ATGGTTAAAC AGGCCAGAGA GAATGCTGCA
GACAGCGGAT TAGATAATGT TTCATTTTTT CATACCGATC TCAGTGCTGA CCTCTCTAAA
GAGACGTGGT TAGGAAAGGT AGATAAATTA TTATTAGATC CTGCCAGAGC GGGAGCGTTT
GAGAGCCTGC AATGGTTGAA AAAGATGAAG CCGAAAGCGA TAGTTTATGT GTCATGCGAC
CCTTCGAGCT TAGCCCGGGA CAGTGAGCCA TTATTAAAGC ATGGTTATAA GCTTAAAAAG
CTTGGCTTAA TCGATATGTT CCCTCAAACC CACCATATCG AAGCCATGGC GTTGTTTGAG
TTGGATTAA
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| Protein sequence | MAQFFKAKPN SSKQLSAKVT LEVTKLDHLG AGMAQHQGKI VFIPGALPNE KVTVQLTEQK
KRHARAKLLK IESDSNDRVE PKCPHYQQCG GCDLQHLSID KQRSYKQSAL VDLMAKLSHT
EAESLAPALI GQEWDYRRRA RLATHYNKES KQITLGFRAS ASKQVINIDV CPVLAKPLSD
LIAPLSLLLN QLSGKKALGH LELIDADNGY FAVLRMTKAL SDKDAKKLTA FANEKSISLI
VQGNEGEFTI LGDRNELPYY ALDDVKLNFT PGNFIQVNAA INESMVKQAV DWLSVKPNER
VLDLFCGVGN FSLPLAKSGA EVIGVEGVPE MVKQARENAA DSGLDNVSFF HTDLSADLSK
ETWLGKVDKL LLDPARAGAF ESLQWLKKMK PKAIVYVSCD PSSLARDSEP LLKHGYKLKK
LGLIDMFPQT HHIEAMALFE LD
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