| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1285 |
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| Symbol | |
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| ID | 5611112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1523979 |
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| End bp | 1526792 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932138 |
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| Product | hybrid sensory histidine kinase BarA |
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| Protein accession | YP_001473024 |
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| Protein GI | 157374424 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000242189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATAATG CCAAAAACAT GACCAAATAC AGTCTCCGTT CCTGGGTTCT GGTACTGGCG
TTAGCTCCGA CAATTCTGGT CGGGATATTA CTGGGCAGTT ATTTTACCAT AAATCGTTTC
TATGAACTCG AAGAAACACT CATAGAGCAA GGCGGCAATA TTATTGAGCC TTTGGCGATA
GCTGCCGAAA TAGGACTCGA AAAGAAAGAT TTTGAAACCA CGAAGAAACT GATCACCGCA
GCTCAACTGA ATAAATCGTC ATTAGTACAA TTTATTGCCA TTTTCGATAC CAACAACCGA
GTCATCGTCA CCTCTCACCA CTATAAAGAT CACGAACTCA TGCGCTATGA TCAGCCCTTG
AGTAGCTTAA TGCGAACCGA ACTCGAGCAA GTGGGTGATA GCCTCATTTT ACGTAGCCCG
ATTTTCTCAT CTGAACATGA ACTCAAAGTT AACTCATTCG ATGAGCAAGA TGCAGAACAG
CTTATTGCGA CTAAGCTGGG TTATATCGCC GTACTGATTA ATAAAGAAAA TGCACTGTTG
GAACAACACC GAGCCGCCGT TGCCGCATTT ATCATCGTAT TAATCGGCGT TCAGCTTAAC
CTGCTATTTA CCTTCAGACT GGTAAAAAAT GTCACCCAGC CGATCACCGA GATGGTGAGG
GTTGTCGCGA AAATTCGTGA AGGTAAACTC GATACCAGAG TGGATGGCAA TCTGATCGGA
GAACTGGATC TGCTTAAGCG TGGTATCAAT GCCATGGCAG GTTCCCTGTC CGACTACCAC
GACGAAATGC AGCAAAATAT CGATCAGGCC ACCTCAGATC TACGAGAAAC GCTCGAGCAA
ATTGAGATCC AAAACGTCGA ACTCGACCTG GCGAAAAAGC GAGCTCTGGA AGCCAGCAGA
ATCAAGTCAG AGTTTCTGGC TAACATGTCC CATGAACTCA GAACCCCACT CAATGGCGTT
ATCGGCTTCG CTAAACAGCT ACTAAAAACG CCGTTACACT CCAGCCAGCA GGACTACATC
AATACCATAG AAAAGAGTGC AACGACTCTT CTGGGTATCA TCAACGATAT TCTCGACTTC
TCCAAACTAG AAGCGGGCAA GATGGTGCTG GAAAACATGC CATTTGCGCT CAGAGAAATG
CTCGATGATA CCATCACGCT TCTGTCAAAC AGCGCACGCG AAAAAGATAT CGAGCTTGTT
GTCGATATCG AGTCTGACGT CCCCGAAGAC CTATCCGGCG ATGCAATGCG AATAAGCCAG
ATAATGACGA ACTTGGTCGG AAATGCCATC AAGTTTACCG ATCAAGGTAG CGTGCACCTC
AAGCTGCAAT TAACCGAATC CAATAATGAA CAGGTTCATT TACGATGTGA AGTCACCGAC
ACCGGAATTG GTATTGATGA TAGCCAGAAA GAGGTGCTGT TTCAGGCGTT TGGGCAGGCA
GACTCCTCTA TCTCTCGTCG TTTTGGTGGA ACGGGTTTGG GATTAATCAT TACTAAGCGT
CTGGTCAATA GAATGGGCGG ACAGATAGGG TGTATCTCTA AGCTCGATAA AGGCTCAACA
TTTTGGTTCA CTCTTCCTCT GCAGACCAGT CAATATCCTA TAGGACAAAT ATTGCCCTTA
GATAAATTGC AAGGCAAGAG CGTACTCCTG CTAGAGCCGA GAGAGTTATC GAATAATACA
CTCAATAGGC TCGTTAACCA CTGGGAAATG AAAGTGACTA ACGCCCACTC TTTCGAGCAA
TTAGGCAACG TCTTCAATCA AAAAACGAGT ACTTTTGATT ACGCATTAAT CAGCTGTAAA
GGGCTAAAAG CAAGTGGGAA TATTTCATCT CAACTGAAAG AGATAAAAGC ACATTGCCAA
TATCTGGTCC TACTATGCAG CAGTAATGAA GCCATAACCC ATAATTTATT GCCTTTTGTC
GATAAGGTGC TCCCTGCGCC AATTGGCGAA AAAGCATTAG CCAAAATCCT CATCGATCCT
CAACCCGATA CAGATAGTGC CTCTTTATTG GAAGACTTAG GCATACCGGA ACCCATTGAA
AGGCAACCTT TACGGGTACT GGCCGTCGAT GATAACCCTG CAAACTTAAA GCTTATCGAC
ACCCTACTTA AAGAGCTAGT CAATCAAGTT ACCGTGATTG ATAGTGGCCA AGGGGCTGTG
AGTATCGCCC AGGAGCGTAG CTTCGACTTA ATATTTATGG ATATTCAAAT GCCGGGTACC
GACGGTATTA GTGCCACCAA GCTTATCCGT CAGGATTCAT TAAACCGGAA TACGCCCATT
ATTGCTGTCA CAGCCCATGC CATCGCCGAG GAGCGTGAGC GAATTCAACA AAGTGGTATG
GATGGTTATT TACCTAAACC TATCGATGAA GCGGCCTTAA AAAGCGTGAT AAGTCGCTGG
AAGACCAGAC CTAAGTTCAC CCACTTCGAT CAATTCACAC TCAATTGGGA GCTATGTCTA
ACCCAAGCAA GCCATAAGCA GGATTTAGCC CTCGACATGC TGAAAATGCT ATTAGATTCT
CTTCCTGAAA CGACTCAACA GATAGAGAGT GCGCTTGAGC AGTTCGATGA TAAGCAGATG
CTGACTACCG TACATAAATT ACATGGCGCT AGTTGTTATT GTGGCATTCC AACCACACAG
AAGCTATGCC AGGAGATTGA GTCAACATTA AAGCAAGGCA CAAGTGTAAC CGATGTCGAA
CCTGAAATAC TTGAGTTACT TGACGAGCTA ACTAAGGTAG AATCGGCTGC AAATCAAGTA
ATATCCCAGT TATCAACGGA CATAATCGAT GACAATCAAA CCAGGCTTCT TTAA
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| Protein sequence | MNNAKNMTKY SLRSWVLVLA LAPTILVGIL LGSYFTINRF YELEETLIEQ GGNIIEPLAI
AAEIGLEKKD FETTKKLITA AQLNKSSLVQ FIAIFDTNNR VIVTSHHYKD HELMRYDQPL
SSLMRTELEQ VGDSLILRSP IFSSEHELKV NSFDEQDAEQ LIATKLGYIA VLINKENALL
EQHRAAVAAF IIVLIGVQLN LLFTFRLVKN VTQPITEMVR VVAKIREGKL DTRVDGNLIG
ELDLLKRGIN AMAGSLSDYH DEMQQNIDQA TSDLRETLEQ IEIQNVELDL AKKRALEASR
IKSEFLANMS HELRTPLNGV IGFAKQLLKT PLHSSQQDYI NTIEKSATTL LGIINDILDF
SKLEAGKMVL ENMPFALREM LDDTITLLSN SAREKDIELV VDIESDVPED LSGDAMRISQ
IMTNLVGNAI KFTDQGSVHL KLQLTESNNE QVHLRCEVTD TGIGIDDSQK EVLFQAFGQA
DSSISRRFGG TGLGLIITKR LVNRMGGQIG CISKLDKGST FWFTLPLQTS QYPIGQILPL
DKLQGKSVLL LEPRELSNNT LNRLVNHWEM KVTNAHSFEQ LGNVFNQKTS TFDYALISCK
GLKASGNISS QLKEIKAHCQ YLVLLCSSNE AITHNLLPFV DKVLPAPIGE KALAKILIDP
QPDTDSASLL EDLGIPEPIE RQPLRVLAVD DNPANLKLID TLLKELVNQV TVIDSGQGAV
SIAQERSFDL IFMDIQMPGT DGISATKLIR QDSLNRNTPI IAVTAHAIAE ERERIQQSGM
DGYLPKPIDE AALKSVISRW KTRPKFTHFD QFTLNWELCL TQASHKQDLA LDMLKMLLDS
LPETTQQIES ALEQFDDKQM LTTVHKLHGA SCYCGIPTTQ KLCQEIESTL KQGTSVTDVE
PEILELLDEL TKVESAANQV ISQLSTDIID DNQTRLL
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