| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1282 |
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| Symbol | |
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| ID | 5613734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1521747 |
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| End bp | 1522715 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932135 |
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| Product | auxin efflux carrier |
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| Protein accession | YP_001473021 |
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| Protein GI | 157374421 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0679] Predicted permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000676976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCTATTGA TGTCGCCAAT CTTGACCCCA CTATTTTCAG TCCTCGGGAT TATGTTATTA
GGTTCACTGA CCCAAAGGCT CAGAGTATTG CCGAGCGATA CCGATCAGGT GCTAAACCAA
TATGTCTATT ACATAGCCTT CCCGGCTATA ATGCTGTTCG CATTGGCGCA GACCCCCATA
GAGGAGATCC TTCAATGGGG ATTCATTGCC GGTTACAGTA TCGCGATGCT GCTGACATAC
TTGTTGGTTG CCGTTCTCTC CCTTCTCACC AATAAGAATC GTTCTGATAT CGCCGCAGTG
CGGGCATTAA ACACCACCTT CGGCAACACC GCATTTATTG GCATTCCACT GCTTTCAATG
ATGTTTCCAG GTCAACAAAG TGCGTTCGCG GCGGCAGCAA TCGCGAGTTT ATTGTCGGTT
GTGGTATTTG CAATTGTACT GGTGACACTT GAGCTGTACC AGGGCGGAAA AAAGCAATCT
CCACTATTAA CTATTGCCCA ATCCCTACTA CAGAACCCAA TCGTCATTGG CAGTGGCATA
GGCGTTCTTC TTTCTGCGTT ACAGATACAG ATGTTCGATG CCATATCGAT GATGGTAAAA
CAGATTGGTA TGAGCTCCAG CCCATGTGCA CTTTTTGCTA TAGGTATGGT GCTGGCAAAA
GCTCGAGCAA CCAATCAGCA CCAGCACACC AACAAAATAA ACCAACTTAT GGAATTAAGC
TGGATTAACC TCTGCAAACT AATCATTCAG CCCTTTCTCG CCTATATTTT ATTATCAGCC
TTCTCCATCA AAGGAGATTA CCTGATCATG GGCGTTATTT TAGCTTCACT CCCCACAGCG
GCCAGTGTCT ACCTGCTGGC GCAAAGGTAT CAAGTCAAAG CGCAGATCAG CGCTATGGCG
ATTGTGTTGG GGACCTTATT CAGCATTTTG ACGCTACCTA TCATCGAAAC ATTACTTAAA
GCTCACTGA
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| Protein sequence | MLLMSPILTP LFSVLGIMLL GSLTQRLRVL PSDTDQVLNQ YVYYIAFPAI MLFALAQTPI
EEILQWGFIA GYSIAMLLTY LLVAVLSLLT NKNRSDIAAV RALNTTFGNT AFIGIPLLSM
MFPGQQSAFA AAAIASLLSV VVFAIVLVTL ELYQGGKKQS PLLTIAQSLL QNPIVIGSGI
GVLLSALQIQ MFDAISMMVK QIGMSSSPCA LFAIGMVLAK ARATNQHQHT NKINQLMELS
WINLCKLIIQ PFLAYILLSA FSIKGDYLIM GVILASLPTA ASVYLLAQRY QVKAQISAMA
IVLGTLFSIL TLPIIETLLK AH
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