| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1281 |
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| Symbol | |
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| ID | 5613733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1519990 |
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| End bp | 1521651 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932134 |
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| Product | recombination and repair protein |
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| Protein accession | YP_001473020 |
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| Protein GI | 157374420 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0497] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000117137 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCTTTGCC AACTCAGTAT CAATAACTTT GCCATCGTCC GCTTTCTGGA GCTTGATTTC
AAACCTGGAA TGACGAGTAT CACAGGCGAA ACGGGTGCGG GTAAGTCGAT AGCAATTGAT
GCTTTAGGAC TCTGTCTGGG TAATCGAGCC GATACCAATA CGCTCAGGCC TGGGGCGACT
AAGGCTGAGT TTAGTGCCAG GTTTTCTCTG GGTGATGTGC CACTGGCGAA GCGATGGCTT
GAAGATAATG ACCTTGAGTT GGGTGATGAA TGTATCCTGA GGCGCACTAT CGGCGGTGAC
GGCCGCTCCA GAGCTTACAT TAATGGTAAC CCTGTGCCAT TAGCCCAAAT TAAAAACCTT
GGACAGCTCT TAATCGGGAT CCACGGCCAG CATGCTCACC ATGCAATGCT AAAAAGTGAA
CACCAACTGA CCCTACTCGA CAGCTACGCC AACCATAGGC TATTGCTGGA GTCTGTATCG
AGCAGTTTCC AACGGAGTAA GCTTATCGAA AAAGAACTTA AGATACTTCA ACAATCACAG
CATGAACGCA TAGCCAGAAA ACAACTGCTT CAGTATCAGG TTGAAGAGCT GAACGAGTTT
GCCCTATCCG ACGGAGAGTT TGAACAGATA GAGGCAGAGC ATAAGAGACT GGCAAATGGT
ACTGCGCTGA TTGAAGCATG TCGTAATGAA CTCTTTATCC TGCAAGACAA TGACCAAGGC
AGTGTAGAGT CACTCATCAA CGCCGGAATA GGTCAGGCTC AGGAACTAGA AAGCTATGAT
CCACAGCTAA ATAGTGTGGT TAACATGCTA AACGAGGCAC TCATTCAAGT TCAAGAGAGC
AGTAGCGAAC TGGAACGTTA TCTTGAAGGA TTGGAACTCG ACCCGGAGCA CTTTTCCTAC
CTCGAGCAAC GACTTTCGAA AGTCATGCTC CTGTCTCGAA AACATCAAGT GACTCCCACT
GATCTCTATG CACACCACCA GACTCTGGTC GGCGAGCTTA CATCACTCGA TTCTGACGAG
GAAGCACTCA CTTCACTGCA GGAGCAGGTT GATGCGAGTC GGGCAAACTT CATCGCTCAT
GCAAAAAAAC TCAGCCTGAG CCGCATCCGT TATGCCAAAG AGCTTGATAA GAAAGTCACT
CAATCTATTC ACGAATTGAG TATGCCCAAA GGAAAGTTCT GTATCTCGGT AAACTTCAAT
GAATCTCATA TCTCCCCTAA CGGCTGTGAC AATATAGAGT TTCTGGTTAC CACTAACCCG
GGGCAACCAC TACAACCCAT ATCTAAAGTC GCTTCGGGTG GTGAATTGTC ACGTATCGGT
TTAGGTATTC AGGTGATCAC CGCCAAGAAG GTCTCCACGC CGACACTGAT ATTCGACGAA
GTCGATGTAG GGATATCGGG CTCGACCGCA GCGGTCGTAG GTAAAATGCT TCGTAGCTTA
GGTGAATCGA CTCAGGTTCT GTGTGTAACT CACCTGCCTC AAGTGGCTGG TAAGGGCCAT
CAACATATGT TCGTCAATAA GCAGAGCAGA GCCGGGAAAA CAGAAACCTC TATGGTGCCA
TTAGATAAGA CACAGCGCAT CGAGGAGTTG GCTCGGTTAC TGGGTGGCGA TGTTATCACC
AGCAACACAC TAGCCAATGC GAAAGAGCTT TTACACTCCT AG
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| Protein sequence | MLCQLSINNF AIVRFLELDF KPGMTSITGE TGAGKSIAID ALGLCLGNRA DTNTLRPGAT
KAEFSARFSL GDVPLAKRWL EDNDLELGDE CILRRTIGGD GRSRAYINGN PVPLAQIKNL
GQLLIGIHGQ HAHHAMLKSE HQLTLLDSYA NHRLLLESVS SSFQRSKLIE KELKILQQSQ
HERIARKQLL QYQVEELNEF ALSDGEFEQI EAEHKRLANG TALIEACRNE LFILQDNDQG
SVESLINAGI GQAQELESYD PQLNSVVNML NEALIQVQES SSELERYLEG LELDPEHFSY
LEQRLSKVML LSRKHQVTPT DLYAHHQTLV GELTSLDSDE EALTSLQEQV DASRANFIAH
AKKLSLSRIR YAKELDKKVT QSIHELSMPK GKFCISVNFN ESHISPNGCD NIEFLVTTNP
GQPLQPISKV ASGGELSRIG LGIQVITAKK VSTPTLIFDE VDVGISGSTA AVVGKMLRSL
GESTQVLCVT HLPQVAGKGH QHMFVNKQSR AGKTETSMVP LDKTQRIEEL ARLLGGDVIT
SNTLANAKEL LHS
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