| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1277 |
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| Symbol | nusB |
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| ID | 5611101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1516303 |
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| End bp | 1516707 |
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| Gene Length | 405 bp |
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| Protein Length | 134 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932130 |
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| Product | transcription antitermination protein NusB |
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| Protein accession | YP_001473016 |
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| Protein GI | 157374416 |
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| COG category | [K] Transcription |
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| COG ID | [COG0781] Transcription termination factor |
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| TIGRFAM ID | [TIGR01951] transcription antitermination factor NusB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000199863 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000534165 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAAGCCTT CTGAGCGCCG TAAGGCCCGC CGTTTAGCCG TTCAAGCCAT TTACTCTTGG
CAGTTAAGTG GAAATAACAT TGCTGATGTT GAGCATGAAT TTCTAACTGA GCAAAAGATT
GATGGTATCG ATGTTGCCTA CTTCCGTGAG CTACTATCGG GAACAGCGAC AAAACAGGCT
CAAATAGACG AGCAAATTAT CCCTCACATT GAGCGTCCTT ATAATGAGGT CTCTCCAATT
GAGAAAGCCG TGTTAAGACT GGCGACTTAT GAGCTTACAT TCCGTAAAGA TGTGCCTTAT
AAAGTTGCAA TTAACGAAGC TATCGAATTA GCTAAAGCGT TCGGTGCTGA AGATGGCCAT
AAGTTTGTAA ACGGTATTCT CGACAAGATT GTAGGTCGTA AGTAA
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| Protein sequence | MKPSERRKAR RLAVQAIYSW QLSGNNIADV EHEFLTEQKI DGIDVAYFRE LLSGTATKQA
QIDEQIIPHI ERPYNEVSPI EKAVLRLATY ELTFRKDVPY KVAINEAIEL AKAFGAEDGH
KFVNGILDKI VGRK
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