| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1271 |
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| Symbol | glyA |
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| ID | 5614044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1510701 |
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| End bp | 1511957 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932124 |
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| Product | serine hydroxymethyltransferase |
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| Protein accession | YP_001473010 |
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| Protein GI | 157374410 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0190768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000260567 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGAAAA AAGATATGAA TATCGCGGAC TTTGATCCAC AACTGTTTCA AGCGATTGCA
GATGAAACTC GTCGTCAGGA AGAGCACATC GAACTTATCG CTTCAGAAAA CTACACCAGT
CCACGTGTTC TGGAAGCTCA AGGTTCTCAG CTAACCAATA AATACGCCGA AGGTTATCCG
GGTAAGCGTT ATTACGGTGG TTGTGAGCAC GTAGACATTG CAGAAGAACT CGCAATTTCT
CGCGCCAAAG AGCTATTTGG TGCTACCTAT GCCAACGTAC AGCCTCACTC AGGTTCTCAG
GCTAACTCAG CTGTATTTAT GGCACTGCTT CAAGGTGGCG ATACGGTATT GGGTATGAGC
TTAGCTCACG GTGGTCACTT AACTCATGGT TCACATGTGA GTTTTTCTGG CAAGCTATAT
AATGCCGTTC AGTACGGGAT CGATGAGGCG ACAGGCAAGA TTGATTACGC CGAAGTTGAG
CGTCTTGCCG TTGAGCACAA GCCTAAGATG ATCATCGCAG GTTTCAGTGC TTACTCAGGT
ATCATCGACT GGGGCAAGTT CCGTGAAATC GCCGACAAAG TAGGGGCTTA CCTGTTTGTT
GATATGGCTC ACGTTGCAGG CCTGGTTGCT GCCGGCATCT ACCCGAATCC ACTCCCGCAC
GCTCACGTTG TAACGACGAC AACTCACAAG ACGCTTGCCG GTCCCCGTGG TGGTTTGATC
CTATCTGCTT GCGATGATGA AGCTATTTAT AAAAAGCTGA ACTCAGCCGT TTTCCCTGGT
GGTCAGGGCG GTCCTTTGAT GCACGTTATC GCTGCTAAAG CGGTTGCGTT TAAAGAAGCA
CTCGAGCCGG AGTTTACTGC TTATCAGGAG CAGGTCGTTG TGAACGCGAA GGCTATGGCT
AAGACGTTTA TCGAGCGTGG CTATGATGTC GTTTCTGGTG GTACAGACAA CCATCTGTTT
TTACTTGATT TGATAAGCAA AGATATCACA GGTAAAGACG CCGATGCTGC CTTAGGACTT
GCTAATATCA CGGTTAATAA GAACTCAGTT CCCAATGATC CGCGTTCTCC GTTTGTGACT
TCGGGTCTTC GTATCGGCTC TCCGGCAATA ACTCGTCGTG GCTTCAAAGA GGAGCAGTCG
GTTGAGTTGA CTAATTGGAT GTGTGATGTA CTTGATGACA TCACAGATCA AGGCACGATT
GAGCGTGTTA AGAATCAGGT GCTTGAATTG TGCGCCAGGT TCCCTGTTTA CGGTTAA
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| Protein sequence | MLKKDMNIAD FDPQLFQAIA DETRRQEEHI ELIASENYTS PRVLEAQGSQ LTNKYAEGYP
GKRYYGGCEH VDIAEELAIS RAKELFGATY ANVQPHSGSQ ANSAVFMALL QGGDTVLGMS
LAHGGHLTHG SHVSFSGKLY NAVQYGIDEA TGKIDYAEVE RLAVEHKPKM IIAGFSAYSG
IIDWGKFREI ADKVGAYLFV DMAHVAGLVA AGIYPNPLPH AHVVTTTTHK TLAGPRGGLI
LSACDDEAIY KKLNSAVFPG GQGGPLMHVI AAKAVAFKEA LEPEFTAYQE QVVVNAKAMA
KTFIERGYDV VSGGTDNHLF LLDLISKDIT GKDADAALGL ANITVNKNSV PNDPRSPFVT
SGLRIGSPAI TRRGFKEEQS VELTNWMCDV LDDITDQGTI ERVKNQVLEL CARFPVYG
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