| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1267 |
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| Symbol | |
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| ID | 5612464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1503399 |
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| End bp | 1506506 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932120 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001473006 |
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| Protein GI | 157374406 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0368024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000615461 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTAATTT CGGATATCTC GGTTAAGCGT CCCGTTGTCG CAATTGTTTT AAGCCTGCTC
CTTTGTGTGT TCGGCGCCGT ATCGTTTTCA AAATTAGCCG TACGTGAAAT GCCCGACGTT
GAAAACCCGG TCGTCACGGT CATGACGACT TATGAAGGGG CTTCGGCGAC CATCATGGAG
AGTCAGATCA CCACGGCACT CGAAGATGAA CTTACCGGTA TCAGTGGTAT CGATGAGATC
ACCTCAGTGA CCCGAAACGG CATGTCGCGT ATCACCATCA CCTTCGATCT GGACTGGGAT
CTTACCGAAG GTGTGAGTGA CGTTCGTGAT GCGGTAGCCC GCGCTCAACG TCGCCTGCCC
GATGAGGCGA ACGACCCCAT TGTTTCTAAG GATAATGGCT CCGGAGAGCC TTCGGTTTAT
ATCAACCTAA GCTCCTCTGT GATGGACAGA ACCCAGCTCA CCGATTATGC ACAACGGGTA
TTGGAAGACA GATTTAGTCT GATCACAGGT GTCAGCTCTG TGAGTATCTC AGGTGGGCTA
TATAAGGTGA TGTACGTTCA GTTAAAACCT GAGCTTATGG CGGGACGTAA TGTAACCACT
GCCGATATTA TCGCAAGCCT GAAAAAAGAG AATGTGGAAA CGCCGGGTGG TGAGGTTCGT
AATGACACGA CTGTGATGAC GGTGAGAACC GCACGCCTCT ATTATCACCC CGAAGACTTT
GACTATTTAG TCGTACGTAC GGCCAGTGAT GGCACCCCCG TTTATCTTAA AGATGTGGCC
TCGGTATTTA TCGGAGCTGA AAATGAAAAT TCGACCTTTA AGAGTGATGG CGTACCTAAC
TTGAGTCTGG GGATTATCGC CCAGTCCGAT GCCAACCCTT TGGAGGTGGC AAAAGCCGCT
CATAAAGAGG TTGAGCGGAT CCAGCAGTTC CTGCCAAAGG GGACTCAATT GGTGGTCGAT
TATGACTCGA CGGTATTTAT CGACCGTTCA ATCACCGAAG TCTACAACAC GCTGTTTATC
ACCGGCGGCT TGGTGGTATT GGTCCTCTAT ATCTTTATCG GCCAGGCGCG TGCGACGCTT
ATTCCCGCGG TAACGGTGCC GGTTTCATTG ATCTCCGCTT TTATCGCGGC AAACTTCTTC
GGCTTTTCCA TTAACCTGTT GACCCTGATG GCCTTGATTC TCTCTATCGG CTTGGTGGTC
GATGATGCGA TTGTGGTGGT GGAGAATATT TTCCATCATA TCGAGAGAGG CGAAGAGCCA
CTGCTGGCCG CATACAAGGG CACCCGTGAA GTAGGTTTCG CCGTCGTTGC GACCACTGCG
GTATTGGTGA TGGTGTTTCT TCCAATCTCG TTTATGGAGG GGATGGTGGG ACGCCTCTTT
ACCGAGTTTT CGGTCATGTT AGCCATGTCG GTGATCTTCT CATCGATAGT AGCGCTTACA
CTGACGCCGG TGCTGGGGAG CAAGATCCTT AAGGCCAACG TCAAACCTAA TCGTTTCAAC
CTGTGGATCG AAGGGATCTT TAGTCAGCTT GAACGTATTT ATCGGGTGTT AGTGGCCAAG
GCGGTGCGTT TTCGCTTTGT CGCCCCGGTG GTAATTGTGC TCTGTATTAT CGGCAGTGGT
TTGTTGATGC AGAGTGTGCC TTCTCAGTTA GCACCACAGG AGGACAGGGG AGTTATCTTC
GCCTTCGTTA AGGGGGCTGA GGGCACCAGT TATAACCGTA TGACCGCCAA TATGGATATC
GTCGAGCAGA GGCTTATGCC CCTGCTAGGA AAGGGGGTGA TTAAGTCATT CAGCGTGCAG
GCCCCCGCCT TCGGTGGACG AGCGGGCGAT CAGACTGGCT TTGTGATCAT GCAGCTCGAA
GACTGGGAAG AGAGAGACAT TAATGCCCAG CAGGCATTGG GAGTCGTATC TAAGGCACTT
GAGGGGATCC CCGATGTGAT GGTGCGCCCT ATGTTGCCGG GCTTCAGGGG ACAATCCAGC
GAGCCGGTGC AATTTGTGAT TGGCGGCTCC GACTATAAAG AGCTGTTTAA GTGGGCCGAA
ATTCTGCAAG AGGAGGCGAT ACACAGCCCT ATGCTGGAAG GTGCCGATCT CGACTATGCC
GAAACCACAC CAGAGCTGGT GGTCAGTGTC GATAGAGAGC GTGCGGCCGA GCTTGGGATC
AGTGTCTCGG AGGTATCGGA GACCTTAGAG GTGATGCTGG GAGGGCGCAG TGAAACCACC
TTCGTTGAGC GTGGCGAGGA GTACGATGTC TACCTCAGAG GCGATGAGAA CAGTTTCAAT
AGCATGGCGG ATCTCAGCCA GATCTATATG CGTTCGGCTA AGGGGGAGTT AATCACCTTA
GACTCGATAA CGCATATCGA AGAGGTAGCC TCGGCCCATA AGCTCAGCCA CACTAACAAG
CAGAAATCTA TCACCCTGAA AGCTAACCTG GGCGAAGGCT ATACTTTAGG TGAGGCGCTG
GACTTCCTCG ATGCGACGGC AATAGAGATT TTACCCAGCG ACATTTCGGT CAGCTATACC
GGTGAATCGA AAGACTTTAA AGAGAATCAG AGCAGTGTGC TGATGGTGTT TGGCTTGGCC
TTGCTGGTGG CATATTTAGT GTTAGCGGCG CAGTTCGAGA GCTTTATTAA CCCTATGGTA
GTGATGTTTA CCGTGCCTAT GGGGGTATTC GGTGGATTCC TTGGGTTATT CCTAACCGGT
CAGGGGCTAA ATATCTACAG TCAGATAGGC ATGATCATGC TGATCGGTAT GGTCACCAAG
AATGGCATCT TGATTGTCGA GTTTGCCAAT CAGCTCAGAG ACAGAGGCAT AGAGTTGGAT
CAGGCGATTA TCGACGCATC GGCCCGAAGG TTACGTCCTA TTTTGATGAC GGCATTTACC
ACCTTAATTG GCGCAGTACC TTTGATTATG TCAACCGGCG CAGGTTCGGA GAGTCGCATC
GCCGTGGGTA CCGTGGTCTT CTTCGGCATG GCATTTGCGA CTTTTGTGAC CCTGCTGGTT
ATCCCGGCCA TGTACCGACT GATATCGGGT GCAACTCACT CACCGGGATT CGTCGAAGAT
AAGCTTAACA GTGCGCTGGA TGCTCAGAGA TTAGCCGAGA TTAAATAA
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| Protein sequence | MLISDISVKR PVVAIVLSLL LCVFGAVSFS KLAVREMPDV ENPVVTVMTT YEGASATIME
SQITTALEDE LTGISGIDEI TSVTRNGMSR ITITFDLDWD LTEGVSDVRD AVARAQRRLP
DEANDPIVSK DNGSGEPSVY INLSSSVMDR TQLTDYAQRV LEDRFSLITG VSSVSISGGL
YKVMYVQLKP ELMAGRNVTT ADIIASLKKE NVETPGGEVR NDTTVMTVRT ARLYYHPEDF
DYLVVRTASD GTPVYLKDVA SVFIGAENEN STFKSDGVPN LSLGIIAQSD ANPLEVAKAA
HKEVERIQQF LPKGTQLVVD YDSTVFIDRS ITEVYNTLFI TGGLVVLVLY IFIGQARATL
IPAVTVPVSL ISAFIAANFF GFSINLLTLM ALILSIGLVV DDAIVVVENI FHHIERGEEP
LLAAYKGTRE VGFAVVATTA VLVMVFLPIS FMEGMVGRLF TEFSVMLAMS VIFSSIVALT
LTPVLGSKIL KANVKPNRFN LWIEGIFSQL ERIYRVLVAK AVRFRFVAPV VIVLCIIGSG
LLMQSVPSQL APQEDRGVIF AFVKGAEGTS YNRMTANMDI VEQRLMPLLG KGVIKSFSVQ
APAFGGRAGD QTGFVIMQLE DWEERDINAQ QALGVVSKAL EGIPDVMVRP MLPGFRGQSS
EPVQFVIGGS DYKELFKWAE ILQEEAIHSP MLEGADLDYA ETTPELVVSV DRERAAELGI
SVSEVSETLE VMLGGRSETT FVERGEEYDV YLRGDENSFN SMADLSQIYM RSAKGELITL
DSITHIEEVA SAHKLSHTNK QKSITLKANL GEGYTLGEAL DFLDATAIEI LPSDISVSYT
GESKDFKENQ SSVLMVFGLA LLVAYLVLAA QFESFINPMV VMFTVPMGVF GGFLGLFLTG
QGLNIYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGIELD QAIIDASARR LRPILMTAFT
TLIGAVPLIM STGAGSESRI AVGTVVFFGM AFATFVTLLV IPAMYRLISG ATHSPGFVED
KLNSALDAQR LAEIK
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