Gene Ssed_1266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1266 
Symbol 
ID5612463 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1502284 
End bp1503399 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content50% 
IMG OID640932119 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001473005 
Protein GI157374405 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.2302e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00027333 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAAAA GTCTGATCTT GCTCCCTATT ATTTTGTTGT TCGCCGTTAT TGCTTCATTC 
AGCAGTTTCA CTCAGGCCAA GAAGCCCGGG GATAAATCTA CCCGCGCCCC CAGAGTGGTT
CCAGTGGTCA CTGGCGTAGT CGAGCAACAT ATGCTTTCTC AAAAAATTGC ACTGATAGGA
AAGCTGGAGG CGGACAGGTC GGTATTTATC GCTCCCGAGG TGGCAGGCAA GATTAAAGCC
ATTAAGGTCA CGGCTAATCA GGAGATAACG GCTGGGCAAC TGCTGATCCA GCTCGAAGAT
GCTAAGCCTC AGGCCAGTGT TGCAGAGGCT AAGGCATACC TCTTCGATGA AAAGCGTAAG
CTAAAAGAGT TTCAGAAACT GATAAGCCAA AGTGCAATCA CTCAAACGGA AATTGATGCG
CAGAAGGCCA GTGTCGATAT TGCAAAGGCA AGGCTCGCCG CTGCACAAGC CGAGCTCGAT
TTTCATTATA TTAAAGCGCC GTTTTCCGGA ACCGCGGGTT TACTCGATTT CAGCTTAGGG
AAGATGGTTA CCGCCGGCAG TGAGCTGTTG TCGCTCGATG ACCTGTCATC CATGAGACTC
GACCTTCAGG TTGCGGAAAA TTACCTCTCT ATGTTAAGTG TAGGTATGAC AGTAACGGCG
ACGAACCGTG CCTGGCCCGG TGAAGTCTTT ACCGGTGAGT TAGTGGCTAT CGATCCGCGT
ATCAATCAGG AAACATTGAA CCTAAAAGTT AGGGTTAGCT TTGGAAATCA AAGCCACAAC
AAAGGTCATA AGCTCATGCC TGGCATGTTG ATGTCGGCCA GTCTGGGTTT CCCTGCTGTA
TCTGAACCCG TTATCCCGGT TCAGGCCATC GAGTATTCCG GCACTAAGCG CTTCGTGTAT
GTTGTCGGCG CGGATAAGCT TGCCAAACGC ACCCAAGTGA CACTCGGTGC CAGAATTCAG
GATGAAGTCC TCATTACCGA AGGCGTAGAT GTGGGAGAGC GTATCGTTGT TCAGGGACTG
GTCAATATGC GTGATGGCCT TAAGGTCAAC GATCTCACCG AGCAACTGGC TTCAGCCGAC
AATGAGTTAA TTGAGCGCGC AGGAGACAGA GGTTAA
 
Protein sequence
MKKSLILLPI ILLFAVIASF SSFTQAKKPG DKSTRAPRVV PVVTGVVEQH MLSQKIALIG 
KLEADRSVFI APEVAGKIKA IKVTANQEIT AGQLLIQLED AKPQASVAEA KAYLFDEKRK
LKEFQKLISQ SAITQTEIDA QKASVDIAKA RLAAAQAELD FHYIKAPFSG TAGLLDFSLG
KMVTAGSELL SLDDLSSMRL DLQVAENYLS MLSVGMTVTA TNRAWPGEVF TGELVAIDPR
INQETLNLKV RVSFGNQSHN KGHKLMPGML MSASLGFPAV SEPVIPVQAI EYSGTKRFVY
VVGADKLAKR TQVTLGARIQ DEVLITEGVD VGERIVVQGL VNMRDGLKVN DLTEQLASAD
NELIERAGDR G