| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1245 |
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| Symbol | |
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| ID | 5611570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1476331 |
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| End bp | 1477155 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932098 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001472984 |
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| Protein GI | 157374384 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.016266 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.622604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAACT TGGAAGGTTT GATCGAGCAA GCACCAGAGC TTATCGTGGC CTATGGAATG
AAAATTATTT TTGCAATTAT CATCTTTCTT GTCGGTAAGT ATCTGGCGGG TGTAGCTAAA
AAAATATCAG ATAAGCTGAT GACTAAGCGA AAAATTGACC CAACAGTGGT CTCTTTCGTC
TCTAATATTG CCTGGGCACT GGTATTCGCG TTCACGGTCG TTGCGACATT GGGACAGTTA
GGCGTTCAAA CAGCGTCTTT AGTCGCCGTA ATTGGTGCCG CCGGTTTAGC CGTTGGCCTG
GCGCTACAGG GTTCTCTGTC AAACTTTGCT TCTGGCGTCT TGATGGTACT GTTTCGTCCT
TGTCGTGTGG GTGATTATGT GGATGCGGCC GGTATCTCTG GTACCGTCGA TGAGATCACT
ATTTTCTCGA CCAAGTTGTT AACACCGGAC AATAAGCTGA TTATTGCACC TAACTCAGCG
ATGATGGATG GAACTATTGT TAACTATTCT GCTATGGATA CGCGTCGTGT CGATTTAGTG
ATAGGTGTGT CATACGATGC CAATTTAGCC GAAGCTAAGA AGGTATTGAC CACAATCGTT
GAGAATAATC AGTACGTCTT AAAAGATCCT GCTTATACGG TTGCTATCTC AGAGCTGGCC
GATTCATCGG TTAACTTTGT TGTACGTCCC TGGGTTAAGG GCAGTGATTA TTGGCCTGCA
TATTTCGAAC TGCTTGAGCA GATTAAACTC GCTCTCGATG AAGCCAATAT CGGTATTCCA
TATCCACAGA TGGATCTTCA TGTGAAGGAG ACGCCTTCAG TGTGA
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| Protein sequence | MENLEGLIEQ APELIVAYGM KIIFAIIIFL VGKYLAGVAK KISDKLMTKR KIDPTVVSFV
SNIAWALVFA FTVVATLGQL GVQTASLVAV IGAAGLAVGL ALQGSLSNFA SGVLMVLFRP
CRVGDYVDAA GISGTVDEIT IFSTKLLTPD NKLIIAPNSA MMDGTIVNYS AMDTRRVDLV
IGVSYDANLA EAKKVLTTIV ENNQYVLKDP AYTVAISELA DSSVNFVVRP WVKGSDYWPA
YFELLEQIKL ALDEANIGIP YPQMDLHVKE TPSV
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