Gene Ssed_1240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1240 
Symbol 
ID5611509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand+ 
Start bp1472427 
End bp1472987 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content44% 
IMG OID640932093 
Producthypothetical protein 
Protein accessionYP_001472979 
Protein GI157374379 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.185429 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAG TTATAGTTGT TTTGGCTGCA ATGGCGATGA GCGCCTGTAG TTCTATGAAA 
ACAAGTTCAG ATTATGATCC TGCGGCTAAT TTTAGTGACG TGAAAACCTA TGCCTGGGTT 
GAACAGAAAA GCCAAGACAC CAGTTACCAT TTAGACGGAT TGATGGATCA ACGTGTCCGA 
GCTGCCGTCG ATAGTCAGCT TTCACTCAAA GGGGTAACAC TCAGTGATCC CCAAACTGCA 
GATATTCTGG TGAATTACCT CACCAAGGTA GATAAGAAGA TTAACGTAGA TACCTTCAAC 
ACAAACTTTG GATATAACCC CTATTATGGT TCTCGATGGG GCATGAGCGG CTCTATGCAT 
ACCCAAACCA CGGTTCGAGA GTATGAGGTT GGAACCTTGA TTTTAGATAT GGTTGATAGA 
GAAACCGGAA AGTTGATCTG GCGTGGCTCG GTAGCCGACA CCATTCGTGA TAAGAATACG 
CCAGAAGAGA GAGTAGAGGT TGTTAACAAG GCTATTTCTG AAATGCTGTT GAATTATCCC 
CCTAAGCCAG AAGCGAAATA G
 
Protein sequence
MKKVIVVLAA MAMSACSSMK TSSDYDPAAN FSDVKTYAWV EQKSQDTSYH LDGLMDQRVR 
AAVDSQLSLK GVTLSDPQTA DILVNYLTKV DKKINVDTFN TNFGYNPYYG SRWGMSGSMH 
TQTTVREYEV GTLILDMVDR ETGKLIWRGS VADTIRDKNT PEERVEVVNK AISEMLLNYP 
PKPEAK