| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1231 |
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| Symbol | |
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| ID | 5614158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1464657 |
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| End bp | 1465475 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932084 |
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| Product | pyrroline-5-carboxylate reductase |
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| Protein accession | YP_001472970 |
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| Protein GI | 157374370 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
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| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000109487 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.438718 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGAGA AGAAGTTGTG TTTTATCGGG GCTGGAAACA TGACCCGCAG CATTACCAGC
GGGTTAGTAA AAAGTGGCTA TACTCCGTCA CTCATTCACG CGACTAACCC CAGCGTCGGA
AAATTAAACG ATCTGAAGCG GGACCTCAAT ATTCTGGTTT CCCATGATAA CCTTGCAGCA
GCCAAAGAGG CCGATGTCGT CGTCTTGAGT GTAAAACCCC ATTTTATGCA GGCCGTATGT
GAAGAGCTCG GCGCACTCGA CCTGGCAGAC AAACTGATCA TTACCATAGC CGCAGGCATT
ACCGCTAATC GTTATAACGA TTATTTCGGC CAAGAGATCA AACTTATCCG TACTATGCCC
AATACACCGA CTCAGATTGG AGTGGGTATG ACAGGTTTAT ATGCTGGCAA TAATATCTCA
GAAAAGCAAA AGCAGTTCTG TGAACAACTC ATGTTAAGTG GCGGCAAAGT CGTCTGGGTA
GAGAAAGAGG AAGAGCTGAA TCAGGTTATT GCCCTGGCAG GCAGCTCTCC TGCATATTTC
TTTCTGTTTA TGGAAGCCAT GATAGCGAAC GCAACCAACT CTGGAATGGA TGAACTCAAG
GCCAGAGCCT TAGTTCAGCA AGCCGCGCTT GGGGCTGCTG AAATGGTGAT TCAAAACCCA
GAGCTTTCCG CCGCGCAACT CAGAGAAAAT GTCACCTCTA AGGGAGGCAC AACGGCTCAG
GCGATTGCCG CCTTTGAATC TGGTAACATC AGAGGACTGG TAAGCAAAGC TATGGATGAC
TGTGTCGCCC GCGCCCAAGA GATGGCTGAG CAATATTAA
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| Protein sequence | MVEKKLCFIG AGNMTRSITS GLVKSGYTPS LIHATNPSVG KLNDLKRDLN ILVSHDNLAA
AKEADVVVLS VKPHFMQAVC EELGALDLAD KLIITIAAGI TANRYNDYFG QEIKLIRTMP
NTPTQIGVGM TGLYAGNNIS EKQKQFCEQL MLSGGKVVWV EKEEELNQVI ALAGSSPAYF
FLFMEAMIAN ATNSGMDELK ARALVQQAAL GAAEMVIQNP ELSAAQLREN VTSKGGTTAQ
AIAAFESGNI RGLVSKAMDD CVARAQEMAE QY
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