Gene Ssed_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1229 
Symbol 
ID5614169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1463777 
End bp1464064 
Gene Length288 bp 
Protein Length95 aa 
Translation table11 
GC content48% 
IMG OID640932082 
Producthypothetical protein 
Protein accessionYP_001472968 
Protein GI157374368 
COG category[S] Function unknown 
COG ID[COG1872] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00251] conserved hypothetical protein TIGR00251 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000279733 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.270499 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTTCCCG TCTCTAAGCA GCAGGATGAC CTGCTGCTTA ATCTCTATAT TCAACCCAAA 
GCCAGTCGGG ACCAGATTGT AGGGGTTCAT GGAGAGGAGC TTAAAATAGC CATCACAGCC
CCTCCGGTCG ATGGTAAGGC GAACGCTCAC CTCATCAAAT ACCTGTCGAA AGCCTTTAAG
GTGCCTAAGG GAGATATCGT AATCCTCAAA GGGCAATTAG GCAGACATAA ACAGATAAAA
ATACTTTCAC CCAGACTTAT CCCCGAGATC ATCAACGCCC TTTTGTAG
 
Protein sequence
MLPVSKQQDD LLLNLYIQPK ASRDQIVGVH GEELKIAITA PPVDGKANAH LIKYLSKAFK 
VPKGDIVILK GQLGRHKQIK ILSPRLIPEI INALL