Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1229 |
Symbol | |
ID | 5614169 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1463777 |
End bp | 1464064 |
Gene Length | 288 bp |
Protein Length | 95 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932082 |
Product | hypothetical protein |
Protein accession | YP_001472968 |
Protein GI | 157374368 |
COG category | [S] Function unknown |
COG ID | [COG1872] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00251] conserved hypothetical protein TIGR00251 |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000279733 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.270499 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTTCCCG TCTCTAAGCA GCAGGATGAC CTGCTGCTTA ATCTCTATAT TCAACCCAAA GCCAGTCGGG ACCAGATTGT AGGGGTTCAT GGAGAGGAGC TTAAAATAGC CATCACAGCC CCTCCGGTCG ATGGTAAGGC GAACGCTCAC CTCATCAAAT ACCTGTCGAA AGCCTTTAAG GTGCCTAAGG GAGATATCGT AATCCTCAAA GGGCAATTAG GCAGACATAA ACAGATAAAA ATACTTTCAC CCAGACTTAT CCCCGAGATC ATCAACGCCC TTTTGTAG
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Protein sequence | MLPVSKQQDD LLLNLYIQPK ASRDQIVGVH GEELKIAITA PPVDGKANAH LIKYLSKAFK VPKGDIVILK GQLGRHKQIK ILSPRLIPEI INALL
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