| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1226 |
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| Symbol | |
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| ID | 5614198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1461159 |
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| End bp | 1462295 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932079 |
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| Product | coproporphyrinogen dehydrogenase |
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| Protein accession | YP_001472965 |
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| Protein GI | 157374365 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000226864 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.222132 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTAACTC TCCCTCCACT TAGCCTATAC GTTCACATTC CCTGGTGTGT GCAGAAGTGC
CCTTATTGCG ACTTTAACTC CCATGGTCAG CATGGAGAGT TGCCACAACA AGCGTACATT
GATGCACTTA TCGCTGATTT GAAAAACGAT ATTCAATATG TTCAAGGACG AAAATTACAC
TCAATTTTCA TCGGTGGTGG CACACCTTCA CTGTTTGATG CCGCTCAAAT AGCAAGATTA
CTGACTCAGG TTTCCCTTCT TATCCCATTC AGCGAACAGA TAGAGATAAG CATGGAAGCC
AACCCGGGAA CGTTAGAGCA TGATGATTTT AAAGCCTACT ATCAGGCCGG AGTGACACGA
TTATCGATTG GTGTACAGAG CTTCTCCAGT GACAAGTTAA ACTTACTGGG CCGAATACAT
GATAAAGATG AAGCCAAGGT CGCCGCTCGC ATGGCTTCTG AGGCCGGCTA TGACAGCTTT
AATCTGGATC TTATGCATGG ACTTCCCAAT CAAAGCTTTG ATGAGGCTAT GGCCGATATT
GATACTGCAG CAGCACTTAA TCCACCACAC CTATCCTGGT ATCAGTTGAC CATAGAGCAA
AATACCCTGT TTCACTCTAA GCCGCCTCAA TTACCGGATG ATGAAGCACT ATGGAAGATC
TATGAGCAAG GTCAGAAAAA ACTGGCAAGC TTAGGTTATG AGCAGTATGA GATCTCCGCC
TATGCCAAAC CCGGCTACCG GTGCCAACAC AACATCAACT ATTGGCAATT TGGTGACTAC
CTCGGCATAG GGTGTGGCGC TCATGGAAAA GTTACACTTT TGGAGTCCAA TAAAATAATC
CGGACAGTCA AAATTAAACA CCCAAAAGGA TATTTGGCTG CAGAACATTA CACCTTCGAT
CTGACAGAGG TCCCTGAAGA TGAGAGAGCG CTAGAGTATC TGATGAACCG TTTTCGCCTC
ATCTCTCCAA TCCCTAAGAG TGAGTTTGAG CAGAGAACCG GCCTATCCCG TACCGTTATC
GAAGAAGGCA TTGCGAAAGC AAAAGCTAAA TCCTTGCTAA TTGAGAATGA AGAATATTGG
GAATTAACAT CAAAAGGTCA GTTATTTGTC AACGAGCTGC TGTCACAGTT TTGCTAA
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| Protein sequence | MLTLPPLSLY VHIPWCVQKC PYCDFNSHGQ HGELPQQAYI DALIADLKND IQYVQGRKLH
SIFIGGGTPS LFDAAQIARL LTQVSLLIPF SEQIEISMEA NPGTLEHDDF KAYYQAGVTR
LSIGVQSFSS DKLNLLGRIH DKDEAKVAAR MASEAGYDSF NLDLMHGLPN QSFDEAMADI
DTAAALNPPH LSWYQLTIEQ NTLFHSKPPQ LPDDEALWKI YEQGQKKLAS LGYEQYEISA
YAKPGYRCQH NINYWQFGDY LGIGCGAHGK VTLLESNKII RTVKIKHPKG YLAAEHYTFD
LTEVPEDERA LEYLMNRFRL ISPIPKSEFE QRTGLSRTVI EEGIAKAKAK SLLIENEEYW
ELTSKGQLFV NELLSQFC
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