Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1225 |
Symbol | |
ID | 5614197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1459172 |
End bp | 1461013 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932078 |
Product | hypothetical protein |
Protein accession | YP_001472964 |
Protein GI | 157374364 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000182029 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.162619 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTATAA GAACAAAAAT CAGCATACTC GCCCTAGCTT TAACCACCAT TATCGGCGGC TCAGCCATTG CCACCCCTTC GCAACCTCCT CTAAGCCCCG GTGAACCCTT AACACAAAAA GCTGAAAATG AATCAAAGAA GGCGAATGCA CTGTTTGAAA TCATCTTCAT GGAAAATGTG ATGCAGAGTC CGATATCTCA GACTCACTTA GGTATCAAGA ATGACTATGA TAAGTGGGAT GAAAGAGGTG AGGAAGCCGA CTCTAATTCA CTGGAGCGCA CCAAACGTCA TCTCACACAG CTTGAGCAGA TTGATGTCTC CAAGCTCGAT GAGCAAACGC GCCTCAGCTT TAATCTCCTC AATCAAAAAC TGAAGCAGGA AGTTAAAGAC TATCAATGGC GCTTTCATAA TTACCCGGTC AACCAGATGC ATGGTGGGCA CACTATGGTC GCCTCTTTTT TAATTAATCA GCACCAGATC GACAGCCAGT CCGATGCCGA GGCTTATATT GCTCGACTTC AGGGAGTACC TGAATACCTT GACCAACTGG AAAGAGCACT GGAGATCCGG GCGGAAAAAG GCATTATTGC CCCACGCTTC GTATTTCCCC ATGTCCTATC TGGCAGCAAG AACATCATCG AAGGGGCACC ATTCGACTCC GGCGAAGACA GTGCAATCTG GGCCGATTTC AAACGTAAAG TTGAGGCGCT GGAGATAGAA AGCAAAGATA AGAAGTTGCT GTTGAGTGAT GCCAGACAAG CCCTGTTGAC CCGGGTTAAA CCTGCTTACG AAAAGCTTAT CAGCTATATC GTTAGACTCG AAACTAAGGC TGATAGCCGT GATGGAGTTT GGAAGTTTCC TCTGGGCGAA CAGTACTATA ACAACGCATT GGCACGCACC ACGACGACCG ATATGACAGC CGAGCAGATC CACGAACTGG GTCTGAAGGA GGTCGCTCGT ATTCATAACG AGATGCGCGA GATCATGAAG AAAGTGAATT TCGAAGGTGA CCTTCCCGCC TTCTTTAAAT TCATGCGAGA AGATAAGCAG TTCTATTACC CCGCAACGGA TGAGGGACGT GATGCCTATT TACACCAGGC TATCACACTT ATAGACACCA TCTCTTCCAG GTTAGATGAA GTGTTTAACG TTAAACCTCA AGCACCTATG ATTGTGAAAC GCGTTGAAAC ATTCAGAGAG AAGTCGGCAG GTAAGGCTTT CTATAATCAA CCTACTCCCG ATGGCAGCAG ACCCGGCACT TACTATGCGA ACCTCTATGA TATGGAAGCC ATGCCTAAGT ATCAGATGGA AGCATTAGCC TATCATGAGG GGACACCAGG GCATCATATG CAGATAGCCA TTGCACAAGA GCTTGAAGGA GTACCCAAAT TCAGAAAATT TGGGGGTTAT ACCGCCTATA TCGAAGGTTG GGGGCTATAC AGTGAGTTTT TCCCGAAAGA GATGGGACTC TATTCCGATC CCTACTCTGA TTTCGGTCGC CTCGCGATGG AGCTATGGCG CTCTTGCCGA TTAGTTGTCG ATACAGGTAT GCATGCCAAG AGGTGGACCC GTGAAGAGTC GATCAATTAT TATGTTCAAA ATACCCCTAA CGCAAAGTCT GATGCGATTA AGATGGTTGA ACGCCATGTA GTCATGCCAT CACAAGCCAC GGCCTATAAA ATAGGCATGC TAAAAATACT CGAATTAAGG CAAAAAGCTA AGCTGGCCTT GGGCAACAAA TTCGATATCA GAGAGTTCCA TACTCTGGTG TTACAAAATG GGCCTCTGCC ATTAGACGTA CTCGAGGAGC AGGTAGATCT GTGGGTTTCT AGAGAAGGTT AA
|
Protein sequence | MPIRTKISIL ALALTTIIGG SAIATPSQPP LSPGEPLTQK AENESKKANA LFEIIFMENV MQSPISQTHL GIKNDYDKWD ERGEEADSNS LERTKRHLTQ LEQIDVSKLD EQTRLSFNLL NQKLKQEVKD YQWRFHNYPV NQMHGGHTMV ASFLINQHQI DSQSDAEAYI ARLQGVPEYL DQLERALEIR AEKGIIAPRF VFPHVLSGSK NIIEGAPFDS GEDSAIWADF KRKVEALEIE SKDKKLLLSD ARQALLTRVK PAYEKLISYI VRLETKADSR DGVWKFPLGE QYYNNALART TTTDMTAEQI HELGLKEVAR IHNEMREIMK KVNFEGDLPA FFKFMREDKQ FYYPATDEGR DAYLHQAITL IDTISSRLDE VFNVKPQAPM IVKRVETFRE KSAGKAFYNQ PTPDGSRPGT YYANLYDMEA MPKYQMEALA YHEGTPGHHM QIAIAQELEG VPKFRKFGGY TAYIEGWGLY SEFFPKEMGL YSDPYSDFGR LAMELWRSCR LVVDTGMHAK RWTREESINY YVQNTPNAKS DAIKMVERHV VMPSQATAYK IGMLKILELR QKAKLALGNK FDIREFHTLV LQNGPLPLDV LEEQVDLWVS REG
|
| |