| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1202 |
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| Symbol | |
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| ID | 5611618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1431537 |
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| End bp | 1431929 |
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| Gene Length | 393 bp |
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| Protein Length | 130 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932051 |
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| Product | type IV pilus biogenesis protein PilE |
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| Protein accession | YP_001472941 |
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| Protein GI | 157374341 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAAATA TAAAAGGATT TACGTTAATT GAAGTTATGA TCACGGTAGT TATTGTCGCT
ATATTAGCGG CTATTGGCTA CCCCTCATAT ATCGATTATG TCACTAAGAG TGGTCGTTCA
GAAGGGGTTG CAGCCGTGCT TCGTGTCGCA AATCTGCAAG AGCAGTACTA TATGGACAAT
AGGGCCTATG CGACTGATAT GACAAAACTG GGGTTAGGCG CTACAGCTTT TAAAACTGAA
CATGGATACT ATGAAGTGAC ATCTAGTGGA ACCAGTTCTT TTACCATCAC CGCCAAGGCA
ATAGGAACAC AAGCTAGCCG TGACTCAATA TGTAAAACAA TTACCTTAAC CGATACTGGA
GCTAAGGGCC CCAATATGGA GTGCTGGAAA TGA
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| Protein sequence | MGNIKGFTLI EVMITVVIVA ILAAIGYPSY IDYVTKSGRS EGVAAVLRVA NLQEQYYMDN
RAYATDMTKL GLGATAFKTE HGYYEVTSSG TSSFTITAKA IGTQASRDSI CKTITLTDTG
AKGPNMECWK
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