| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1192 |
|---|
| Symbol | |
|---|
| ID | 5613822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1418267 |
|---|
| End bp | 1419826 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640932041 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_001472931 |
|---|
| Protein GI | 157374331 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000262812 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAAAA AATTGATTAA GTCAGGCATT ATCGTCAGTG CAATGACCTT AGTTTCTCGT
GTGTTAGGTT TAGTCAGAGA TGTTGTGATT GCAAACCTAA TGGGGGCGGG CAGTGGTGCC
GATGTGTTTA TCCTGGCGAA TAAAATTCCT AATTTTTTAA GACGTCTATT TGCCGAAGGT
GCGTTTGCGC AAGCATTTGT ACCTGTATTC ACCGAGTATC AGCAGAAACA ATCCGATGAA
GAGGTGCGTC TGCTCATTGC TAAAGTTACC GGGACATTAG GGGTACTGGT CAGTATCGTG
ACATTAGTCG GTGTGCTTGC TTCACCTGTT ATAATTGCAT TGTTTGGTAA TGGCTGGTTT
GTTGCCTGGA TTAATGATGA ACCCAGCGGT GCTAAGTTTG AACTTGCCTC TTTCTTGTTA
AAAATCACTT TTCCCTACCT GTGGTTTATC ACCTTCACGG CGCTGGCAGG CTCTATCCTA
AATACTCGAG GTAGATTTGC CGTTTCAGCG TTTACACCCG TTTTCTTAAA CATTGCTATC
ATCTGCGCGG CTCTGTTTGT TGCACCTGAA CTTGAGCAGC CAGAAATCGG CTTAGCATTA
GGGGTATTTT TTGGTGGGTT AATACAGTTT CTGTTTCAAT TGCCTTTTTT ACTTAAAGAG
AAGGCCCTTG TTAAGCCATC TTGGGGATGG AATCATCCTG GAGTCACCAA AATAAGAACC
TTGATGCTTC CCGCGATTTT CGGAGTATCG GTTTCTCAGA TCAATCTACT GTTTGATACC
TTTATTGCCA GTTACCTGAT GACCGGCTCC ATCAGCTGGC TATACTATTC AGATCGTCTA
CTCGAATTCC CTCTGGGCTT GTTTGGTATC GCTATTGCTA CCGTGATCTT ACCTGCATTA
TCTAAAAAAC ATGTCAATGA TGAAGGTAAA GGCTTTGAAA CGACCATGAA CTGGGGAGTG
AAAGCGATAC TATTACTTGG CATGCCTGCC ATGTGTGGCT TAATAATCCT GGCCAAGCCT
ATGTTAATGG TTCTGTTTAT GCGTGGAGCA TTCACTTTCG ATGATGTAGA GATGGCGTCC
TATAGCTTAA TGGCTTACGG CAGTGGTTTG TTAAGTTTTA TGCTGATAAA AGTGCTGGCC
CCCGGTTATT ATTCACGGCA AGACACTAAA ACGCCGGTTC GGTACGGCAT CATTGCTATG
GTGAGTAATA TGGTGTTTAA CGTCATTTTT GCTATTCCAT ATGGGTATGT CGGCTTAGCT
ATTGCTACCT CCCTGTCGGC ATTGCTGAAC GCTGGTTTAC TCTATCGCGG CCTGCATAAA
GCTAACGTTT ACCGGGTAAA CAGACAAACC GGGCTCTTCT TCTTTAAAAC CTTATTGTCT
TGTTTAATGA TGACGCTTGT CTTAATACAG TTTTTACCCG GTCAGGATAT CTGGCTACAA
CAGGTGTTTT CACAAAGGGC AATATCACTC TTAGGCCTGA TTGGCTTAGG GGCTGCAAGC
TATTTATTGA GCATGATTTT GCTGGGAATT CGTCCCTGGA AGCTAAAAAC GGGACTATAA
|
|---|
| Protein sequence | MSKKLIKSGI IVSAMTLVSR VLGLVRDVVI ANLMGAGSGA DVFILANKIP NFLRRLFAEG
AFAQAFVPVF TEYQQKQSDE EVRLLIAKVT GTLGVLVSIV TLVGVLASPV IIALFGNGWF
VAWINDEPSG AKFELASFLL KITFPYLWFI TFTALAGSIL NTRGRFAVSA FTPVFLNIAI
ICAALFVAPE LEQPEIGLAL GVFFGGLIQF LFQLPFLLKE KALVKPSWGW NHPGVTKIRT
LMLPAIFGVS VSQINLLFDT FIASYLMTGS ISWLYYSDRL LEFPLGLFGI AIATVILPAL
SKKHVNDEGK GFETTMNWGV KAILLLGMPA MCGLIILAKP MLMVLFMRGA FTFDDVEMAS
YSLMAYGSGL LSFMLIKVLA PGYYSRQDTK TPVRYGIIAM VSNMVFNVIF AIPYGYVGLA
IATSLSALLN AGLLYRGLHK ANVYRVNRQT GLFFFKTLLS CLMMTLVLIQ FLPGQDIWLQ
QVFSQRAISL LGLIGLGAAS YLLSMILLGI RPWKLKTGL
|
|---|
| |