| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1191 |
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| Symbol | rpsT |
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| ID | 5613821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1417753 |
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| End bp | 1418019 |
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| Gene Length | 267 bp |
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| Protein Length | 88 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932040 |
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| Product | 30S ribosomal protein S20 |
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| Protein accession | YP_001472930 |
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| Protein GI | 157374330 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0268] Ribosomal protein S20 |
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| TIGRFAM ID | [TIGR00029] ribosomal protein S20 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000303326 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGCTAATA GCAAGTCTGC AAAGAAGCGC GCGCTTCAAT CTGAAAAACG TCGTCAGCAT
AACGCTAGTC GTCGTTCAAT GTTACGTTCA TACGTAAAGA AAGTTATCGC AGCAATTAAT
GCTGGCGATC ACAAAGCGGC TACTGAAGCA TTTAATGCTG CACAACCAAT TGTTGACCGT
ATGGCGACTA AAGGCCTTAT TCACAAGAAT AAAGCTGCTC GTCAGAAGTC TCGCTTAAAC
ACTAAGATCA AAGCACTTGC TGCTTAA
|
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| Protein sequence | MANSKSAKKR ALQSEKRRQH NASRRSMLRS YVKKVIAAIN AGDHKAATEA FNAAQPIVDR
MATKGLIHKN KAARQKSRLN TKIKALAA
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