| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1184 |
|---|
| Symbol | pgi |
|---|
| ID | 5612298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1407316 |
|---|
| End bp | 1408953 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932033 |
|---|
| Product | glucose-6-phosphate isomerase |
|---|
| Protein accession | YP_001472923 |
|---|
| Protein GI | 157374323 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0166] Glucose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00253768 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC TGACTCAGGG TAAAGCCTGG AAAACATTAG AAGCTCATAC CCAAGCTTTA
CCTCATATGA GGGCGCTTTT CGAAGCTGAC ACCAAACGTT TCGACAATAT GTCTACATCA
GCCTGCGGCC TGTTTTTAGA TTACTCCAAA AACAGGGCAA ACAAGGAGAC GATGTCTCTC
CTGTTCAGTG TTGCAGAAGA TGCTCAGCTC GAATCGAAAA TCAAAGCCAT GTTCAATGGC
GAAATGATCA ACACGACAGA GAAGCGGGCC GTGCTGCATA CGGCGCTTCG TGCTAAGCCT
GAACAAGAAA TAATGCTTAA TGGTGTTAAT ATTGTTCAAG AGGTTCAAGA AACACAGCAG
CAGATGGAAC TGTTCGTCGA TGCTGTAAGC TCAGGTAACT GGAAAGGTTA CACTGGCAAG
AAGATCACCG ATATTGTCAG TATCGGAATT GGCGGCTCCT TCCTGGGACC AAAGATAGTT
TCACAGGCAC TAAGACCCTA TTGGAGCAAG CAGCTAAATT GTCATTTTGT TGCTAATGTT
GATGCGAGTT CTATCGTTGA GAAATTAAAG CCTCTCAATG CTGAAACCAC ACTATTCATC
ATGTCCTCTA AATCTTTTGG AACCCAAGAG ACACTAACGA ATACCTTAAG TGCAAAAGAC
TGGTTTATCG AACAAGGTGG CTCTCAAGCT GACGTTGCTA AGCATTTCGT TGCTGTCACA
TCTAATGTAG AAAAAGCCAC TGAATTTGGT ATCGATGCAG ATAATATCTT CCCTATGTGG
GATTGGGTTG GGGGTCGTTA CTCTCTTTGG TCTGCCATCG GACTCCCGAT AGCTTTATTG
GTCGGGATGG ATAACTTCAG AGCCTTGCTG AGTGGCGCAA ATGAGATGGA TCAACATTTT
GCGAATACGC CACTTTCTGA GAATATGCCG GTGATCATGG GCCTGTTCTC ATTGTTATAT
GGCAATTTCC ATGACGCTCA GTCTCATGTG GTCTTAACTT ATGATCATTA CTTGAGAGGA
TTACCAGCGT ACTTCCAGCA ACTGGATATG GAGAGTAATG GTAAATCTGT GACCTTAGAT
GGCACAGAGG TCGATCACAG CACTGGGCCT GTTATCTGGG GCGGAGAAGG TACAAACGGC
CAGCATGCAT ACCATCAGTT ATTGCATCAA GGAACGGCCC TTATCCCAGC TGACTTTATC
ATGCCACTTC AGAGCCATAA TCCTCTTGGA GAGCATCATG TGCAGCTTGC CTCAAATTGT
TTCGGTCAAA CTCAGGCACT GATGCAGGGT CGTTCATATG AAGAAGCACT CAAAGAGCTC
GCCGGTAGCA AACTGCCAGC CGATGAAAAA AGCGTAATAG CGAAGCATAA AGTAATGCAG
GGCAATAAGC CCAGCAACAC CATTTTAATG GATAAACTAA CTCCAACGAC ATTAGGTGCG
TTAATCGCCT TATATGAGCA CAGAACTTTC GTTCAGGGTG CAATCTGGCA GATAAACTCA
TTCGATCAGT GGGGCGTCGA ACTTGGTAAG ACATTAGGTA ATGATGTTCT GGATAGACTC
AGTGCTGAAA ATGATGCAAC CGAACTGGAC TGTTCAAGCA ATGGCTTGAT CAACATGTTC
AGACAGAAAA AAATCTAG
|
|---|
| Protein sequence | MTELTQGKAW KTLEAHTQAL PHMRALFEAD TKRFDNMSTS ACGLFLDYSK NRANKETMSL
LFSVAEDAQL ESKIKAMFNG EMINTTEKRA VLHTALRAKP EQEIMLNGVN IVQEVQETQQ
QMELFVDAVS SGNWKGYTGK KITDIVSIGI GGSFLGPKIV SQALRPYWSK QLNCHFVANV
DASSIVEKLK PLNAETTLFI MSSKSFGTQE TLTNTLSAKD WFIEQGGSQA DVAKHFVAVT
SNVEKATEFG IDADNIFPMW DWVGGRYSLW SAIGLPIALL VGMDNFRALL SGANEMDQHF
ANTPLSENMP VIMGLFSLLY GNFHDAQSHV VLTYDHYLRG LPAYFQQLDM ESNGKSVTLD
GTEVDHSTGP VIWGGEGTNG QHAYHQLLHQ GTALIPADFI MPLQSHNPLG EHHVQLASNC
FGQTQALMQG RSYEEALKEL AGSKLPADEK SVIAKHKVMQ GNKPSNTILM DKLTPTTLGA
LIALYEHRTF VQGAIWQINS FDQWGVELGK TLGNDVLDRL SAENDATELD CSSNGLINMF
RQKKI
|
|---|
| |