| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1177 |
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| Symbol | |
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| ID | 5612313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1399502 |
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| End bp | 1400782 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932026 |
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| Product | threonine synthase |
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| Protein accession | YP_001472916 |
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| Protein GI | 157374316 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0498] Threonine synthase |
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| TIGRFAM ID | [TIGR00260] threonine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.300194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGT ATAACCTAAA ACACCCGCAG CAGGTGGTGA ATTTTACCCA AGCCCTGAAG
TTAGGTCTGG GAAAAGACAG AGGACTTTTT TTTCCGAAGC AGATCCCGGT TTTGGATGAC
ATAGAAGCAC TTTTAGCAAT GCCTTTTGTT GAACGCTGCA AAAAAGTACT CGGTGCATGG
TTATCATCAG AGCTTGGTCA GGACAGGGTG GATACCTTAG TTGAGAAAGC CTTTAACTTT
GAGCTCTCTC TCGCTAAAGC CGACGACAAA CGATACTGCC TCGAGTTGTT TCATGGTCCA
ACATTAGCAT TTAAAGACTT TGGCGCACGA TTTATGGCGC AGTGTTTGAA CGAACTCGCG
TCAGATGAAA AAATTAGTAT TCTAACTGCA ACCTCAGGCG ATACCGGGGC GGCCGTTGCC
GATGCATTCT TTGGTTTGGA TAATATCCAA GTTGTGGTTT TGTATCCTAA AGGCAAGATC
AGTTTACTGC AGGAAAAGAT GTTTACCACC TTGGGTGACA ACATACACAC AGTATCGGTT
GAGTCAGACT TTGATGCTTG TCAGGACTTA GTTAAGCGAG CGTTCGAAGA TAGCGATGTT
CGTGACGGTT TGCATCTGAA CTCGGCTAAC TCCATCAATA TTAGTCGCCT GCTTGCCCAG
ATCTGTTATT ACTTTGAGGC CGTCGCTCAA TTTAAACGTG AGCATAAGCA AGATCCTGTG
ATTGCTGTGC CCAGTGGTAA CTTTGGTAAC TTAACGGCGG GATTGTTCGC CAAGGCGATG
GGGTTGCCCG TCAAACGCTT TGTTGCCGCG ACTAACAGCA ATGACACCGT ACCACGTTAT
TTAGATCAAG GTGATTGGCT TCCTCATGCA ACCGTTGCAA CCATGTCTAA TGCAATGGAT
GTCGCAGAGC CTAGTAACTG GCCAAGAGTG GAAGCGATAG TGGATGCCAT GAGCTGGTCG
CTATCCGATA TTACCGGTGT TGCTTTATCT GAGTCAGATA CCTCTGAGGC TCTTAAAGAG
TTAAATCGTG CAGGCTATCT TTCTGAGCCT CATGCAGCAA TCGCGGCTCA AGCGCTTACT
TTGACTATGT CCGATGATGA TAAAGGCATA TTCTTGGGTA CGGCTCACCC AGCTAAGTTT
AAAGAGGTGG TTGAGAGTGA GCTCAGTATT GAGGTGCCAC TTCCTCCGGC TTTAGCCGCT
GTCGCTGACA AAGACATTTT GTCGGCAACA TTAGAGGCTG ATTTTACAGA GTTGAAATCT
CACCTATTTA AGGTGCTGTA G
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| Protein sequence | MELYNLKHPQ QVVNFTQALK LGLGKDRGLF FPKQIPVLDD IEALLAMPFV ERCKKVLGAW
LSSELGQDRV DTLVEKAFNF ELSLAKADDK RYCLELFHGP TLAFKDFGAR FMAQCLNELA
SDEKISILTA TSGDTGAAVA DAFFGLDNIQ VVVLYPKGKI SLLQEKMFTT LGDNIHTVSV
ESDFDACQDL VKRAFEDSDV RDGLHLNSAN SINISRLLAQ ICYYFEAVAQ FKREHKQDPV
IAVPSGNFGN LTAGLFAKAM GLPVKRFVAA TNSNDTVPRY LDQGDWLPHA TVATMSNAMD
VAEPSNWPRV EAIVDAMSWS LSDITGVALS ESDTSEALKE LNRAGYLSEP HAAIAAQALT
LTMSDDDKGI FLGTAHPAKF KEVVESELSI EVPLPPALAA VADKDILSAT LEADFTELKS
HLFKVL
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