Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1175 |
Symbol | thrA |
ID | 5611503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1396031 |
End bp | 1398496 |
Gene Length | 2466 bp |
Protein Length | 821 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932024 |
Product | bifunctional aspartokinase I/homeserine dehydrogenase I |
Protein accession | YP_001472914 |
Protein GI | 157374314 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0460] Homoserine dehydrogenase [COG0527] Aspartokinases |
TIGRFAM ID | [TIGR00657] aspartate kinase [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAGTAA TGAAGTTTGG TGGTACCTCG CTGGCAAATT GGCAACGATT TAATACGGCA GCAGATATCG TGGTCGATAC CGCTAAGAGC GAGTCGGTTG CAGTGGTTTT GTCAGCACCG GCGACGGTAA CCAATGGTTT GCTTGAGATG GTCGATGTTG CGGTTAGCGG CGAAGACTTC AAACCCGTTT TATCGGGTGT TGAACAGGTA TTCAGCTCCT TGTATCAGAG TGCCTCCTCT GTTTTACAGT CCGGGCAAGT GACCCCTTTA ATGGAGCGTC TGTCTCAGCA ACTTAGTCAC TGGGAAAACA AATTACTTGG CATCAGTCTT TTAAAAGAAT GTCCCGATTT TGTTCGCGCC GATATTCTGG TTGGTGGAGA AAAACTTTCC GCTGCCCTTA TGACGCAATT AATGGTTGCC AAAGGTCTCA GCTCTAACGT TTTTGAGCCA CAATCTCTGT TTCTTGCTTC GGGTGACCCA TTAGAATCTG TGGTCGATAT CGAGTCGAGT AAGGCACGCT TCAAGCGAGT AGCACTAGAT GAATATCGTG TCTGGGTGAT GCCGGGCTTT ACCGCCGGTG ATAAAGAGGG TCGCACTGTC ACACTCGGAA GGAATGGTTC TGATTACTCT GCTGCGGTTT TATCGGCATG TTTAGATGCC AGCTGTTGTG AAATCTGGAC AGATGTTGAC GGCGTCTATA ATACCGACCC CCGAGTGGTT ACCGATGCGA AATTACTTTC TCAGTTAAGC TACCAAGAGG CGATGGAGCT TTCCTATTTT GGTGCTAAGG TATTGCATCC AAAAACAATC TCACCTATCG CCCAGTACCA TATTCCATGC TATATCAGAA ATAGCTTTAA TCCAAAGGCT CCAGGAACGC TTGTTTCGAA TGAAGCAGAT GAAAGTGGCT TGAATGTAAA GGCCATCTCG AATTTAGATG AGCAAACTAT GTTTGATATT TCGGGACCCG GAATGAAAGG CATGGTGGGC ATGGCGAGCC GTACTCTCGG CGCCATCTCG CGTTCGGGGA TCTCCATCTC TCTAATAACT CAAAGCTCCT CTGAATATAG CATCAGCTTT TGTGTGGCGA CTCAAGATGC CGCTAAGGCA AAAGAATCTC TGGAGCTGGA GTTTGAACTG GAATTAAAGA GTGAAATTCT TGAACCAATA GAGATGAGGC ATGAGTTAGC CATTGTCTCG TTAATTGGGG ATGGAATGCG GACCCATAAA GGCGTTGCGG GTAAGTTTTT CCAGGCATTG GCTCAAGCGA CAGTTAATAT CGTCGCTATC GCTCAGGGAT CCTCAGAACG TTCAATATCA ACGGTTATCG AACAGCGCAA AACCAAGCAT GCGATTTCGG CCTGTCATCA AAGCTTTTTC GATGTTCAAC ATTATCTCGA CGTGTTCTTA GTTGGCTGCG GTAATGTTGG CGCCGGTTTA CTCGAGCAGA TAAAGCAGCA GGCAGAAATG TTGAAACAGC AACACATCAC CATTCGTGTG TGTGGTATTG CTAACTCCAG GCATATGCTG CTCGATGCCA AAGGCGTAGA TCTCAGCGGA TGGCAGAGTC TGTTGTCAGA TTGTCAAACT GAGTGCGATC TGGACCTGAT GCTTAAGTGG GCTAAAGAAC AGCAACTGCT TAATCCTGTG TTGGTTGACT GTACCTCCAG TGAGTATGTA TCGGATAAAT ATCTGGATGT GATGAATGCC GGTTTGCATG TCGTCACACC CAATAAAAAA GCGAATACCC GGGATATAGA ATATTACCGC GCACTACGTG CGACGGCATT GAAACAGCGC AGACAGTTCC TTTATGAAAC AACAGTAGGG GCTGGCTTAC CTGTGATAGA TAACTTGAAA AAACTGTTGT TCGCCGGGGA TAAGTTACTC AAATTTAATG GCATCTTATC CGGCTCGCTC TCCTATATAT TCGGCATGCT CGATGAGGGA ATGACACTCT CGGAGGCGAC AGGTATTGCC AGAGATAAGT GTTTTACTGA GCCCGATCCA CGCGATGACT TAAGTGGTAT GGATGTCGCG AGAAAGGTAC TTATCCTGGC CCGTGAAGTG GGTTTAGATT TAGAGCTAGA TGATATTAAC ATCGAGTCTG TGTTACCAGA TTCTTTTGAT GCCGATGGTG ATGTTGAGAC TTTCATGGTG AACCTGCCAA AGCTCGATCA GCAGATCGCA CTCTGGGTAG AGAAGGCCCG CAGTGAAGGT AAAGTTCTTA GGTATGTGGG GCAGATCGAT GATGATGGTT GCCGCGTTAA AATAGCCGAA GTCGATGCAA GCGACCCACT GTATAGTGTT AAAGGCGGTG AGAACGCACT GGCATTCTAT AGCCGTTACT ATCAGCCGAT TCCCTTTGTG CTGAGAGGCT ATGGTGCAGG AACTGACGTT ACCGCTGCCG GGGCATTTGC CGATCTACTG AGAACATTAA ACTGGACGCG GGAGATGAGC TCATGA
|
Protein sequence | MKVMKFGGTS LANWQRFNTA ADIVVDTAKS ESVAVVLSAP ATVTNGLLEM VDVAVSGEDF KPVLSGVEQV FSSLYQSASS VLQSGQVTPL MERLSQQLSH WENKLLGISL LKECPDFVRA DILVGGEKLS AALMTQLMVA KGLSSNVFEP QSLFLASGDP LESVVDIESS KARFKRVALD EYRVWVMPGF TAGDKEGRTV TLGRNGSDYS AAVLSACLDA SCCEIWTDVD GVYNTDPRVV TDAKLLSQLS YQEAMELSYF GAKVLHPKTI SPIAQYHIPC YIRNSFNPKA PGTLVSNEAD ESGLNVKAIS NLDEQTMFDI SGPGMKGMVG MASRTLGAIS RSGISISLIT QSSSEYSISF CVATQDAAKA KESLELEFEL ELKSEILEPI EMRHELAIVS LIGDGMRTHK GVAGKFFQAL AQATVNIVAI AQGSSERSIS TVIEQRKTKH AISACHQSFF DVQHYLDVFL VGCGNVGAGL LEQIKQQAEM LKQQHITIRV CGIANSRHML LDAKGVDLSG WQSLLSDCQT ECDLDLMLKW AKEQQLLNPV LVDCTSSEYV SDKYLDVMNA GLHVVTPNKK ANTRDIEYYR ALRATALKQR RQFLYETTVG AGLPVIDNLK KLLFAGDKLL KFNGILSGSL SYIFGMLDEG MTLSEATGIA RDKCFTEPDP RDDLSGMDVA RKVLILAREV GLDLELDDIN IESVLPDSFD ADGDVETFMV NLPKLDQQIA LWVEKARSEG KVLRYVGQID DDGCRVKIAE VDASDPLYSV KGGENALAFY SRYYQPIPFV LRGYGAGTDV TAAGAFADLL RTLNWTREMS S
|
| |