| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1163 |
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| Symbol | |
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| ID | 5613819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1382435 |
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| End bp | 1383526 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932012 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_001472902 |
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| Protein GI | 157374302 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000535062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGCAAG ATACAATTAA TAATGTTCAT ATCAGTTCAG AGAAAGTATT AGTGACTCCA
CAGGAGTTAA AACTTGAGCT CCCTCTATCT GAACATGCCT ATCATTATGT GTTAAATGCA
CGTAAGACTG TTGCCGATAT CGTCCATAAA CGTGATAACC GCGTGCTCAT TGTCACCGGT
CCCTGCTCAA TCCATGATAT TGCTTCGGCG AAAGAGTACG CACTTAAACT CAAGAAGCTT
CATGATGAGC TCAGCGATGA GTTCTACATT CTTATGCGCG TATACTTCGA AAAGCCTCGC
ACAACGGTTG GTTGGAAAGG CATGATTAAT GACCCGGATA TGGATGAGTC ATTCGACGTC
GAAAAGGGGT TACGTCAGGC CAGAGAGTTG ATGATCTACT TAGCCGAGCT TGGCCTGCCG
GTGGCTACCG AAGCCTTAGA CCCTATCAGC CCGCAGTACA TGTCGGAGCT GGTTACCTGG
TCGGCAATTG GGGCTCGTAC CACTGAATCA CAAACCCACA GAGAGATGGC GTCGGGTTTG
TCTATGCCGG TTGGATTTAA AAATGGCACA GATGGCAAGC TTGGGGTGGC AATTAATGCT
TTGGAATCTG CCGCCAGTGG TCATCGTTTC ATGGGGATTA ACCAGAAAGG ACAAGTTGCC
CTGTTGCAAA CCGCGGGTAA TCCTGACGGT CACGTGATCT TACGCGGTGG CAAAACACCT
AACTATGATT CTGGAAGTGT TGCCGAGTGT GAGCGTCAGC TTCACAGTGC AAATCTTAAT
GCACGTTTAA TCGTGGATTG TAGCCACGGA AATTCATCAA AGGATCATCG CAAGCAGAAG
GGCGTCTGTG AAGATGTGTT TGGCCAAATT TCAGACGGCA ATCAATCCAT CATAGGCGTC
ATGTTAGAGA GTCACCTAAA TGAGGGAAAT CAGAGTAGCA ATAAGCCCAT GGACGAGCTC
GATTACGGTG TATCTGTGAC GGATGCCTGC ATAGATTGGG AAACCACTGA GCAGATATTA
CGCGATGGTT CGGCCTTATT GTCTTCGGTT TTACCAACTC GATTTGATAT GCTTAAGGTT
GCCAACGCCT GA
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| Protein sequence | MQQDTINNVH ISSEKVLVTP QELKLELPLS EHAYHYVLNA RKTVADIVHK RDNRVLIVTG
PCSIHDIASA KEYALKLKKL HDELSDEFYI LMRVYFEKPR TTVGWKGMIN DPDMDESFDV
EKGLRQAREL MIYLAELGLP VATEALDPIS PQYMSELVTW SAIGARTTES QTHREMASGL
SMPVGFKNGT DGKLGVAINA LESAASGHRF MGINQKGQVA LLQTAGNPDG HVILRGGKTP
NYDSGSVAEC ERQLHSANLN ARLIVDCSHG NSSKDHRKQK GVCEDVFGQI SDGNQSIIGV
MLESHLNEGN QSSNKPMDEL DYGVSVTDAC IDWETTEQIL RDGSALLSSV LPTRFDMLKV
ANA
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