| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1161 |
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| Symbol | trmD |
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| ID | 5614040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1380953 |
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| End bp | 1381681 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932010 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001472900 |
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| Protein GI | 157374300 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000761862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGTTAG GGGTAGTAAC CCTGTTTCCT GAGATGTTTC GCGCCGTAAC AGACTTTGGA
GTAACGGGTC GGGCCGTTAA AAATGGCCTG CTGGAGTTGC AAACGTGGAA TCCTCGTGAT
TTCACCCATG ATAAACATAA GACAGTGGAT GACCGACCTT ATGGCGGTGG CCCTGGCATG
TTAATGATGG TGCAGCCTTT ACGCGATGCT ATTCATGCGG CGAAAGCTGC GACTGGCGAC
AGTGCGAAGG TGATTTATCT ATCTCCTCAA GGACGCAAGC TTACACAGCA AGGCGTCGAA
GAGTTAGTTA AGTCAGACAG TTTGATTTTA GTGTGCGGTC GATACGAAGG TATAGACGAA
CGCATTATTC AAACTGAAGT GGATGAAGAG TGGTCTATTG GAGATTACGT GCTTTCGGGC
GGTGAACTTC CTGCAATGAC TCTGATTGAT TCAGTATCAC GGCTGGTTCC TGGTGTACTA
GGAAAGAAAG CCTCGGCAGA GCAGGATTCC TTCTCTGACG GATTATTGGA TTGTCCCCAC
TATACTCGTC CTGAAACCTT GGATAACTTA GATGTACCGG CAGTGTTGTT AAGTGGCAAC
CACGAACATA TTAGACGCTG GCGTCTACAA CAGAGTCTCG GTAGAACTTT GTTAAGACGA
CCAGATTTAT TAGAAAATCT AGCTCTGACT GACGAACAAA CGAAGCTGTT AAATGAGTTT
GTTGAATAA
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| Protein sequence | MRLGVVTLFP EMFRAVTDFG VTGRAVKNGL LELQTWNPRD FTHDKHKTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAATGD SAKVIYLSPQ GRKLTQQGVE ELVKSDSLIL VCGRYEGIDE
RIIQTEVDEE WSIGDYVLSG GELPAMTLID SVSRLVPGVL GKKASAEQDS FSDGLLDCPH
YTRPETLDNL DVPAVLLSGN HEHIRRWRLQ QSLGRTLLRR PDLLENLALT DEQTKLLNEF
VE
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