| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1160 |
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| Symbol | rimM |
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| ID | 5614039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1380407 |
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| End bp | 1380937 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932009 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_001472899 |
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| Protein GI | 157374299 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000339506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGTA AACAAGAACC TGTTGTGCTG GGGAAATTAG GATCCAGTCA TGGCATTAAG
GGTTGGTTGA AGATCACTAC CTATACCGAT TCTGTTGAAG GTATTTTTGA CTATTCACCT
TGGTTGATAA AAGAGCAAGG CGAATGGCGC GAGGTTAAAG TGCTCCAGTG GCGTTTTCAA
GGTAAAGCGG TTGTCGCTTG TCTTGAGGGC GTAGAAACAC GGGAACACGC GCAGATGCTC
ACTAATTGTG AGATAGCGGT GACTCCAGAG CAGATGGACA CCTTGCCGGA AGATGAATTC
TACTGGCGAG ATCTTATCGG TTGTGAAGTG ATGAATACCA AAGGCTACAA CATGGGGAAA
GTACAGGAGA TCGTGGAAAC AGGATCGAAT GATGTACTCC TTGTTAAAGC TAACGCAAAA
GATGGCTTCG GCAAAGCGGA ACGTATGATC CCCTTTGTCA CCGAGCAGTT CATCATTGAG
GTGAACTTAA CGGAAAAACA GATCACAGTG GATTGGGATC CGGACTTTTA A
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| Protein sequence | MSSKQEPVVL GKLGSSHGIK GWLKITTYTD SVEGIFDYSP WLIKEQGEWR EVKVLQWRFQ
GKAVVACLEG VETREHAQML TNCEIAVTPE QMDTLPEDEF YWRDLIGCEV MNTKGYNMGK
VQEIVETGSN DVLLVKANAK DGFGKAERMI PFVTEQFIIE VNLTEKQITV DWDPDF
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