| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1154 |
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| Symbol | |
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| ID | 5609876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1373792 |
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| End bp | 1374814 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932003 |
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| Product | sensory box protein |
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| Protein accession | YP_001472893 |
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| Protein GI | 157374293 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGATA CCTATAAACA TAGTGAAGTC ACAGAGTCAG ACACCACCCT AAATGCTATC
CTGGATTTAA TCGTCGAGGG AACATGGGAC TGGAACGGTG AGACAGGCCA TGTAACCCGC
AGCCCGGGAT GGTATCGCAT GCTTGGCTAT GAGGTAGGGA TATTTCTGGA GAATGTGTTT
ACCTGGGAAA ATATTATTCA CCCCGATGAC TACAAGAGAG TCATGACCCA CTTCGAACAA
TATATAAACG GGCAGTCTAC TCAATACCTT ATCGAATACC GCTGCAAAAA GTCTGATGGA
AGCTACCTAT GGATAATCGA CCGGGCTAAG ATACAGGCTT ATAAAGCCGA TGGTACCGTC
GCCAGAATGA TTGGCGCACA CCACAATATT CATAATAAAA AGTTAGCTCA AGATGAAGTT
AGTAAACTCA ATAAGCTCCT TCAGCAAGGT AATATGTCAC TGGACAACCT GATAAAGATA
AACGCAAAAG AGTTGGAGAA GAAAAACCAG GAACTCGAAG AGAAGATTAA AGAGGTCGCG
CTCCTCTCCA ATATTGACCC ACTCACCTCT ATCGCTAACC GAAGAAGCTT TGAAAAAGAG
TTACAAAAAG AGGTATTACG CTCAAGAAGA TACAATCATC CCCTCTCCTT AACCATTTTT
GATATAGATC TATTCAAAAA TGTAAACGAC ACCTATGGGC ACAAGAAAGG CGACGATATC
CTGCAAAAAT TGTGTAAGCT GGTATCCACT AATATCAGAG AACTCGATTT TTTTGCCCGC
TGGGGAGGCG AAGAATTTGT CCTCATATTT CCTGAGTTAA CACTCAAGCA AGCACTCGTC
GTAACCGAGA AGCTCAGAAC AACCATCAGC CAGTATGAGA TTGAGCCCGA TCTCTATATT
ACCTGTAGTT TCGGAGTCAC CGAGTGCAAA GATGAAGACT CAATAGAGGA TATATTTCAG
CGCATCGATA ACTCACTGTA TCAAGCCAAA AGCAATGGCC GCAACCGAAT CGAGAGCCTG
TAA
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| Protein sequence | MNDTYKHSEV TESDTTLNAI LDLIVEGTWD WNGETGHVTR SPGWYRMLGY EVGIFLENVF
TWENIIHPDD YKRVMTHFEQ YINGQSTQYL IEYRCKKSDG SYLWIIDRAK IQAYKADGTV
ARMIGAHHNI HNKKLAQDEV SKLNKLLQQG NMSLDNLIKI NAKELEKKNQ ELEEKIKEVA
LLSNIDPLTS IANRRSFEKE LQKEVLRSRR YNHPLSLTIF DIDLFKNVND TYGHKKGDDI
LQKLCKLVST NIRELDFFAR WGGEEFVLIF PELTLKQALV VTEKLRTTIS QYEIEPDLYI
TCSFGVTECK DEDSIEDIFQ RIDNSLYQAK SNGRNRIESL
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