Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1148 |
Symbol | rnc |
ID | 5610297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1368592 |
End bp | 1369269 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931997 |
Product | ribonuclease III |
Protein accession | YP_001472887 |
Protein GI | 157374287 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00543431 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.710949 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAACCGA TTAAAAACAT GCCTAGATTA TGTCGAACTT TAGGTTATGA GTTCAACGAT CAATCGCTAC TCGAGCATGC ATTAACGCAT CGTAGTGCGT CCAGTAAACA TAATGAAAGG CTAGAGTTCC TTGGAGACTC TATACTGTCC ATTATCATCT CTGATGCACT GTTTCATCAA TTCCCTAAGG CCACTGAGGG CGATCTGAGT CGTATGCGTG CCACACTCGT CTGTGGAAAA ATGCTGGCTG AGATCGGTTT CGAGTTTAAA TTAGGCGATT ACCTGAATTT AGGCCCGGGA GAGTTGAAAA GCGGTGGGTT TCGACGAGAG TCAATCATTG CCGATGCCGT AGAAGCCATT ATAGGCGCCG TCTACATCGA TTCAGGTGTA GAAAAGTGTC GCTGTTTAGT GCTGAGTTGG TATGAGTCTC GTCTTGCGAT TATCCAGCCT GTAAACCAGA AAGATCCAAA AACCTTGTTG CAGGAGTTGT TGCAAGGTTT TAAAAAACCA CTTCCGGTCT ACAAAGTAAT AGACATTAAA GGTGAGGCGC ACGCGCAAAC CTTTACGGTG GAGTGTTATG TTGAAGAGTT AAGCAAGCCG GTTATCGGTA TTGCAAGTTC CCGTAGAAAA GCGGAGCAGC TAGCGGCTGC CGACGCTTTG GAGTTAATGA AGAGATGA
|
Protein sequence | MEPIKNMPRL CRTLGYEFND QSLLEHALTH RSASSKHNER LEFLGDSILS IIISDALFHQ FPKATEGDLS RMRATLVCGK MLAEIGFEFK LGDYLNLGPG ELKSGGFRRE SIIADAVEAI IGAVYIDSGV EKCRCLVLSW YESRLAIIQP VNQKDPKTLL QELLQGFKKP LPVYKVIDIK GEAHAQTFTV ECYVEELSKP VIGIASSRRK AEQLAAADAL ELMKR
|
| |