Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1147 |
Symbol | |
ID | 5610296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1367673 |
End bp | 1368590 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931996 |
Product | Signal peptidase I |
Protein accession | YP_001472886 |
Protein GI | 157374286 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0681] Signal peptidase I |
TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000185511 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.576512 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGCCT ATTTTTCCCT TATCTTGGTA TTAGTGACTC TGAGTAGTGG CCTGGTTTGG ATGGCCGACG CATTGTTACT TGCACCTAAG CGTCGTGCAA AGCTTGCGAT GGCGCAAGCG GTGGACGCTG ATATCAGTGA AGAAGTCGCC GAAAAAATCA CTCGTGAACC TGCACTCGTT GAGACGTCTC GTTCTATTTT TCCAGTGATC GCATTCGTAC TAATTTTACG TTCATTTATT TATGAACCTT TTCAGATCCC ATCGGGTTCT ATGATGCCAA CACTCTTAGT CGGCGATTTT ATCTTAGTTG AGAAGTTTAG CTACGGGCTT AAAGACCCTG TGTGGCGCAA CCAGTTGGTT GAGACTAATA AGCCTGAACG CGGTGATGTG ACGGTATTTA AGTATCCGGT CGACCCAAGA ATCGATTACA TCAAGCGAGT AGTTGGTCTA CCTGGTGATA GAATTGTCTA CCGAAATAAG CAGCTCTATA TACAGCCGGC GTGCGGTGAG GGCGTAGAGA CTTGCCCCGA ACTTAAGCAG GTATCCCGAG CGTCTGTTAA TCAGGGGGAG TTTGCTCAAA ACGGTACGCC ACTACTGCGT TACACTGAAC AATTGGGCGA ATTGAGTCAT GATATTCTGA TCAACCCGAG TCGCCCCGAT CCTTTGGGAT ATTACTTCCG TGAAGGCAAT CTTCCTGTCG GAGAGTTCAT CGTTCCTGAA GGCCAATATT TTATGATGGG AGACAACCGC GATAACAGTA CCGATAGTCG TTTCTGGGGA TTCGTACCCG AGGAGAACCT AGTCGGTAAA GCGGTTGCTA TCTGGATTAG TTTTGAATTT GAACGAACTG CAGCCGACTT CTTACCAAGC TGGATCCCAA CGGGTGTACG TTTTGAGCGC GTAGGTGGAA TTACTTAA
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Protein sequence | MAAYFSLILV LVTLSSGLVW MADALLLAPK RRAKLAMAQA VDADISEEVA EKITREPALV ETSRSIFPVI AFVLILRSFI YEPFQIPSGS MMPTLLVGDF ILVEKFSYGL KDPVWRNQLV ETNKPERGDV TVFKYPVDPR IDYIKRVVGL PGDRIVYRNK QLYIQPACGE GVETCPELKQ VSRASVNQGE FAQNGTPLLR YTEQLGELSH DILINPSRPD PLGYYFREGN LPVGEFIVPE GQYFMMGDNR DNSTDSRFWG FVPEENLVGK AVAIWISFEF ERTAADFLPS WIPTGVRFER VGGIT
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