Gene Ssed_1147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1147 
Symbol 
ID5610296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1367673 
End bp1368590 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content47% 
IMG OID640931996 
ProductSignal peptidase I 
Protein accessionYP_001472886 
Protein GI157374286 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0681] Signal peptidase I 
TIGRFAM ID[TIGR02227] signal peptidase I, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000185511 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.576512 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCCT ATTTTTCCCT TATCTTGGTA TTAGTGACTC TGAGTAGTGG CCTGGTTTGG 
ATGGCCGACG CATTGTTACT TGCACCTAAG CGTCGTGCAA AGCTTGCGAT GGCGCAAGCG
GTGGACGCTG ATATCAGTGA AGAAGTCGCC GAAAAAATCA CTCGTGAACC TGCACTCGTT
GAGACGTCTC GTTCTATTTT TCCAGTGATC GCATTCGTAC TAATTTTACG TTCATTTATT
TATGAACCTT TTCAGATCCC ATCGGGTTCT ATGATGCCAA CACTCTTAGT CGGCGATTTT
ATCTTAGTTG AGAAGTTTAG CTACGGGCTT AAAGACCCTG TGTGGCGCAA CCAGTTGGTT
GAGACTAATA AGCCTGAACG CGGTGATGTG ACGGTATTTA AGTATCCGGT CGACCCAAGA
ATCGATTACA TCAAGCGAGT AGTTGGTCTA CCTGGTGATA GAATTGTCTA CCGAAATAAG
CAGCTCTATA TACAGCCGGC GTGCGGTGAG GGCGTAGAGA CTTGCCCCGA ACTTAAGCAG
GTATCCCGAG CGTCTGTTAA TCAGGGGGAG TTTGCTCAAA ACGGTACGCC ACTACTGCGT
TACACTGAAC AATTGGGCGA ATTGAGTCAT GATATTCTGA TCAACCCGAG TCGCCCCGAT
CCTTTGGGAT ATTACTTCCG TGAAGGCAAT CTTCCTGTCG GAGAGTTCAT CGTTCCTGAA
GGCCAATATT TTATGATGGG AGACAACCGC GATAACAGTA CCGATAGTCG TTTCTGGGGA
TTCGTACCCG AGGAGAACCT AGTCGGTAAA GCGGTTGCTA TCTGGATTAG TTTTGAATTT
GAACGAACTG CAGCCGACTT CTTACCAAGC TGGATCCCAA CGGGTGTACG TTTTGAGCGC
GTAGGTGGAA TTACTTAA
 
Protein sequence
MAAYFSLILV LVTLSSGLVW MADALLLAPK RRAKLAMAQA VDADISEEVA EKITREPALV 
ETSRSIFPVI AFVLILRSFI YEPFQIPSGS MMPTLLVGDF ILVEKFSYGL KDPVWRNQLV
ETNKPERGDV TVFKYPVDPR IDYIKRVVGL PGDRIVYRNK QLYIQPACGE GVETCPELKQ
VSRASVNQGE FAQNGTPLLR YTEQLGELSH DILINPSRPD PLGYYFREGN LPVGEFIVPE
GQYFMMGDNR DNSTDSRFWG FVPEENLVGK AVAIWISFEF ERTAADFLPS WIPTGVRFER
VGGIT