| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1146 |
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| Symbol | |
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| ID | 5610978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1365715 |
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| End bp | 1367505 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931995 |
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| Product | GTP-binding protein LepA |
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| Protein accession | YP_001472885 |
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| Protein GI | 157374285 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0481] Membrane GTPase LepA |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01393] GTP-binding protein LepA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000362085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCACA TTAGAAACTT TTCGATTATT GCCCATATCG ACCACGGCAA ATCAACACTC
TCCGATCGTT TGATTCAAGA ATGCGGTGGT CTTTCTGATC GTGAGATGGC GGCCCAAGTA
TTAGACTCAA TGGACATTGA GCGTGAACGC GGGATTACCA TTAAAGCGCA GAGTGTTACT
CTTGATTATA AAGCTCAAGA TGGTGAAACA TACCAGCTGA ATTTTATTGA TACTCCTGGT
CATGTCGATT TCTCCTATGA AGTATCACGC TCCCTTGCGG CTTGTGAAGG TGCGCTCTTG
GTGGTCGATG CCGGACAGGG CGTAGAAGCT CAGACTCTGG CAAACTGTTA TACCGCGCTA
GAGATGGATA TGGATGTTGT TCCTGTCTTG AATAAAATCG ATCTGCCTCA GGCCGATCCA
GAACGTGTCG CCGATGAGAT TGAAGATATC GTCGGTATCG AAGCTGCCGA TGCAGTTCGC
TGTTCGGCAA AAACAGGCAT CGGTATTAAA GACGTGCTTG AAGTTATCGT CGCACAAATA
CCATCGCCAG AAGGTGATCC AGAAGGGCCT CTGCAAGCTC TGATCATCGA TTCTTGGTTC
GATAGCTATC AAGGTGTTGT GTCACTGGTA CGAATTAAAA ATGGCGTACT GAGAAAAGGT
GACAAGTTTA AGGTTATGTC CACAGGGCAA AACTATAACG CCGATCGCGT GGGTATCTTT
ACCCCTAAAC AAACAGATAC CACTGAGCTG AAAACCGGTG AAGTAGGCTT TATTATTGCT
GGTATTAAAG AGATCCACGG CGCCCCAGTG GGGGATACCT TGACTCATGC TAAGCATGGT
GCAGATAAAC CGCTTGCTGG TTTTAAGAAG GTTAAGCCGC AGGTTTATGC TGGTTTATTT
CCTATCTCTA CCGACGATTA TGAGAGCTTC CGTGATGCAT TGAACAAGCT TAGCTTGAAT
GATGCCTCTT TGTTCTTTGA GCCTGAAACG TCATCTGCGT TGGGCTTTGG TTTCCGTATC
GGTTTCCTCG GCCTGCTACA CATGGAGATC ATCCAGGAAC GTTTAGAGCG TGAATATAAT
CTGGATTTGA TCACTACGGC GCCTACGGTT GTCTATGAGA TTGTAAAGAC GAGCGGTGAA
ACCATCTATG TCGATAACCC ATCGGATCTT CCTGCGATAA ACAATATCGA AGAGATGCGT
GAACCGATAG TAGAGACCAA TATTTTGGTG CCTAAGGAGT ACCTGGGTAA CGTGATCACC
CTGTGTGTCG AAAAGCGCGG TGTGCAGAAA AACTTGGTTT ACCACGGTAA CCAAGTGGCC
CTGACCTATG AGTTACCGAT GGCTGAAGTG GTCATGGACT TCTTCGACCG CCTTAAGTCG
ACCAGTCGTG GTTATGCGTC TCTTGAGTAT AACTTTATCC GTTTTGAGCC TGCTGACATG
GTGCGTCTGG ATATTCTCAT CAATGGTGAC AGAGTCGATG CTTTGGCAAT GATTATTCAC
AAAGGCTTGA TCCGCTCTAA AGGTCTGGCA CTTGTGAATA AGATGAAAGA GCTTATTCCA
CGTCAGATGT TTGATATTGC AGTTCAAGCC GCTGTCGGCA GTCAGATTAT CGCGCGCTCT
TCGATTAAAG CGATGCGTAA AGATGTAACG GCTAAGTGTT ATGGTGGTGA TGTTTCTCGT
AAGAAGAAGC TATTGAACAA GCAAAAAGAG GGCAAGAAGC GCATGAAGCA GGTGGGTAAT
GTGGAAGTCC CACAAGAAGC CTTCCTCGCC GTGCTTAAGC TCAATGATTA G
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| Protein sequence | MKHIRNFSII AHIDHGKSTL SDRLIQECGG LSDREMAAQV LDSMDIERER GITIKAQSVT
LDYKAQDGET YQLNFIDTPG HVDFSYEVSR SLAACEGALL VVDAGQGVEA QTLANCYTAL
EMDMDVVPVL NKIDLPQADP ERVADEIEDI VGIEAADAVR CSAKTGIGIK DVLEVIVAQI
PSPEGDPEGP LQALIIDSWF DSYQGVVSLV RIKNGVLRKG DKFKVMSTGQ NYNADRVGIF
TPKQTDTTEL KTGEVGFIIA GIKEIHGAPV GDTLTHAKHG ADKPLAGFKK VKPQVYAGLF
PISTDDYESF RDALNKLSLN DASLFFEPET SSALGFGFRI GFLGLLHMEI IQERLEREYN
LDLITTAPTV VYEIVKTSGE TIYVDNPSDL PAINNIEEMR EPIVETNILV PKEYLGNVIT
LCVEKRGVQK NLVYHGNQVA LTYELPMAEV VMDFFDRLKS TSRGYASLEY NFIRFEPADM
VRLDILINGD RVDALAMIIH KGLIRSKGLA LVNKMKELIP RQMFDIAVQA AVGSQIIARS
SIKAMRKDVT AKCYGGDVSR KKKLLNKQKE GKKRMKQVGN VEVPQEAFLA VLKLND
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