| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1136 |
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| Symbol | nhaA |
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| ID | 5610248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1357815 |
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| End bp | 1359014 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931985 |
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| Product | pH-dependent sodium/proton antiporter |
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| Protein accession | YP_001472875 |
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| Protein GI | 157374275 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3004] Na+/H+ antiporter |
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| TIGRFAM ID | [TIGR00773] Na+/H+ antiporter NhaA |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGGG CTATTAAGAA TTTTTTAAGC CAGGAATCGG CGGGTGGCAT TCTGCTTATG
ATTGCAGTTG CACTCGCAAT GATTATGGCC AATTCGCCAC TATCAGGAAT GTATCAAGGC
TTCCTGGATA CGGAAATGCA GGTACGCGTC GGTAGCTTAG ACATCGACAA GACTCTGATA
CATTGGATCA ACGATGGCCT GATGGCTCTG TTCTTCATGC TTATTGGCTT AGAGGTTAAG
CGTGAGTTAC TTGAGGGGGC ACTATCGAGT GCGGCTCAAG CATCTTTACC GACTTTTGCA
GCGGTTGGAG GCATGGTATT CCCGGCGGGC ATCTATCTGT TATTCAACTA TGGTGATCCG
GTGACTCAAG CTGGCTGGGC TATTCCTGCT GCAACAGATA TCGCGTTCGC TTTAGGTGTC
ATGGCCCTCT TGGGGAGCCG CGTACCTGTA TCACTTAAGG TCTTCTTGTT AGCCTTGGCA
ATTATTGATG ATTTAGGTGT TGTGGTGATC ATCGCCATGT TCTACAGCAC AGATCTTTCT
ATGTTGAGTC TGATAGTGGC TGGTATTGCT ATTTTAGGGC TGGTCGGACT TAACCGGAAA
GGAGTGACGG CCTTAGGCCC CTACGGCGTA GTAGGTCTTA TCCTCTGGAT AGCGGTATTG
AAATCGGGTG TTCACGCTAC CTTAGCGGGT GTGATTATTG CCTTCTGTAT TCCATTGAGG
GCAAAAGATG GCAGCTCTCC CTCTGAGAGT CTGGAGCATA GCTTGCACCC GTGGAGTACC
TTCATCATCT TGCCGATATT TGCGTTTGCC AATGCCGGGG TCGATTTGAG CCCGATGAGT
TTCGGCGACC TGCTATCACC TGTACCTGTC GGTATCGCCT TAGGCCTGCT GTTGGGTAAG
CCATTAGGCG TGCTTGTATT CAGCTATATT GGTGTCAAGC TAAAAATGGC TGTATTACCT
GAGGGGATGG GGTGGAAACA TATTGCACCG GTTGCCCTGA TGTGTGGTAT CGGTTTCACC
ATGTCGATGT TTATCTCTTC GCTGGCATTT GTTGGTGATG CAGAAGCATA CGGTGATTTT
GCAAGATTGG GTATTTTAGT GGGGTCGTTC GCATCGGCGA TTATTGGTTA CTTCTGGTTG
GCTAAGGTAT TGCCCGAAGT CGATGTCGCT AAAGAAAGCA AGAAAGGAGA GATAGCATGA
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| Protein sequence | MERAIKNFLS QESAGGILLM IAVALAMIMA NSPLSGMYQG FLDTEMQVRV GSLDIDKTLI
HWINDGLMAL FFMLIGLEVK RELLEGALSS AAQASLPTFA AVGGMVFPAG IYLLFNYGDP
VTQAGWAIPA ATDIAFALGV MALLGSRVPV SLKVFLLALA IIDDLGVVVI IAMFYSTDLS
MLSLIVAGIA ILGLVGLNRK GVTALGPYGV VGLILWIAVL KSGVHATLAG VIIAFCIPLR
AKDGSSPSES LEHSLHPWST FIILPIFAFA NAGVDLSPMS FGDLLSPVPV GIALGLLLGK
PLGVLVFSYI GVKLKMAVLP EGMGWKHIAP VALMCGIGFT MSMFISSLAF VGDAEAYGDF
ARLGILVGSF ASAIIGYFWL AKVLPEVDVA KESKKGEIA
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