Gene Ssed_1132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1132 
Symbol 
ID5613767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1352758 
End bp1353276 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content44% 
IMG OID640931981 
Productdinucleoside polyphosphate hydrolase 
Protein accessionYP_001472871 
Protein GI157374271 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000912913 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTGATA GTGACGGCTT TCGCGCGAAT GTGGGCATCA TTATCTGTAA TCGCTTTGGG 
CAGGTTATGT GGGCTAGAAG ATTTGGTCAA CATTCCTGGC AATTTCCTCA GGGTGGGGTC
GATGAAGGCG AAACACCTGA AGAGGCGATG TTTAGAGAGT TGTATGAAGA GGTTGGATTA
AGGCCTGAAC ATGTTCAGAT ATTAACTTCT ACCCGCTCTT GGTTACGTTA CAGATTACCC
AAACGTTTAA TAAGGCAAGA TAGTAAGCCT GTGTGTATTG GGCAGAAGCA AAAATGGTTT
TTGTTACAGC TTAAGAGTAA TGAGAGTGCG ATTGATTTGA ATGCTTGTGG TCATCCTGAG
TTTGATGACT GGCGTTGGGT GAGTTATTGG TATCCGGTGC GACAGGTTGT GTCATTTAAA
AGAGATGTTT ATAGAAAGGT GATGAAAGAG TTCGCTCCTA CGGCACTCCC ATTTCAAACT
AGGGAACATC ACCATAGCAG GAGAGGCAGA CGACGTTAG
 
Protein sequence
MIDSDGFRAN VGIIICNRFG QVMWARRFGQ HSWQFPQGGV DEGETPEEAM FRELYEEVGL 
RPEHVQILTS TRSWLRYRLP KRLIRQDSKP VCIGQKQKWF LLQLKSNESA IDLNACGHPE
FDDWRWVSYW YPVRQVVSFK RDVYRKVMKE FAPTALPFQT REHHHSRRGR RR