| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1127 |
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| Symbol | |
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| ID | 5611482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1347232 |
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| End bp | 1348158 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931976 |
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| Product | putative radical SAM protein |
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| Protein accession | YP_001472866 |
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| Protein GI | 157374266 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1242] Predicted Fe-S oxidoreductase |
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| TIGRFAM ID | [TIGR01212] radical SAM protein, TIGR01212 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0121319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGGTTTGG ATCAGTACGT ATATACATTT GGTGTTTTTT GTAAGAATCA ATTTGGTGAA
AGACTAAGAA AGTTAACCAT AGATGCCAAG TTTACCTGTC CAAACAGAGA TGGCACCTTG
GGCAAGGGGG GCTGTACCTA TTGTAATGTT GCCTCTTTTA ACCACGAACA TGGCACTGAG
CTATCAATTC AAGAGCAGCT TGATCAAGGC CGAGAAAGGG TTGCAGGAAG ATCTTCTAAA
TATATCGCTT ATTTTCAAGC GTATACCAGT ACCTACGATG AATACCGAGT ATTGAAAACT
AAATACGATG AAGCGATTAA AGATCCTGAC ATCGTAGGAC TTTGTGTAGG CACCAGGCCG
GACTGTGTTT CCGATGATGT GATTGAGTTA CTGGCATCAT ATCAAGACAG AGGCATAGAG
GTGTGGTTGG AGCTTGGCCT GCAATCGGCA AAAGACAAAA CACTTAAACG TATCAATAGA
GGCCATCTCA TGGCTGATTA TATTGATACC GTCACGCGAG CTCGCGCACG TGGTATTAAG
GTCTGTACTC ATCTTATTCT TGGCCTACCC GACGAAGAGC ATCAGGATTA CCTGAATAGT
TTAAACGCCG TTTTGGCGGC AGGCGTAGAT GGGTTAAAGC TGCATCCGCT GCATATTGTC
GAAGGCAGTA CCATGGCAAA AGCATGGCGC AACGACAGGA TGAAACTGCT AACGGTGGAA
GAGTATGCTT ACAGCGTTGG TGAGATGATC CGTCACACTC CAAAAGATAT TATTTTTCAT
AGGGTAACAG CCTATGCAAA GAAGCCTATG TTACTTGCTC CCGATTGGTG TGCCTTTCGC
TGGAATGGCC TTGTAGCCAT TGTGAATGAT CTGAAAGCCA AGGGTGAGCA AGGAAGCTAT
TTGATTTCTA AGCTAAAAGT TGAATAA
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| Protein sequence | MGLDQYVYTF GVFCKNQFGE RLRKLTIDAK FTCPNRDGTL GKGGCTYCNV ASFNHEHGTE
LSIQEQLDQG RERVAGRSSK YIAYFQAYTS TYDEYRVLKT KYDEAIKDPD IVGLCVGTRP
DCVSDDVIEL LASYQDRGIE VWLELGLQSA KDKTLKRINR GHLMADYIDT VTRARARGIK
VCTHLILGLP DEEHQDYLNS LNAVLAAGVD GLKLHPLHIV EGSTMAKAWR NDRMKLLTVE
EYAYSVGEMI RHTPKDIIFH RVTAYAKKPM LLAPDWCAFR WNGLVAIVND LKAKGEQGSY
LISKLKVE
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